miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10781 5' -50.5 NC_002794.1 + 88279 1.1 0.010359
Target:  5'- gAGACCCGGAAAUUUCCAGGGCAAACGa -3'
miRNA:   3'- -UCUGGGCCUUUAAAGGUCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 88244 0.85 0.319317
Target:  5'- cAGaACCCGGAAAUUUCCGGGuGgAAGCGg -3'
miRNA:   3'- -UC-UGGGCCUUUAAAGGUCC-CgUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 23897 0.75 0.8058
Target:  5'- aGGGCCCGGGAgccgaGUgcagcagCguGGGCGAGCGa -3'
miRNA:   3'- -UCUGGGCCUU-----UAaa-----GguCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 86803 0.75 0.814761
Target:  5'- gAGACCUaGGGGAgaUCCAGGGCc-GCGa -3'
miRNA:   3'- -UCUGGG-CCUUUaaAGGUCCCGuuUGC- -5'
10781 5' -50.5 NC_002794.1 + 147241 0.74 0.848793
Target:  5'- uGGGCCCGaGAGcacUCC-GGGCAGACGc -3'
miRNA:   3'- -UCUGGGC-CUUuaaAGGuCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 115854 0.74 0.872193
Target:  5'- cGGGCCUGGGAcgcgcgagGggUCCGGGGCGucCGg -3'
miRNA:   3'- -UCUGGGCCUU--------UaaAGGUCCCGUuuGC- -5'
10781 5' -50.5 NC_002794.1 + 8173 0.73 0.900232
Target:  5'- cGGGCCCGGcgucccgcccGGUUUCCcacccGGGCAAACa -3'
miRNA:   3'- -UCUGGGCCu---------UUAAAGGu----CCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 86912 0.73 0.906646
Target:  5'- cGACCCGGugacgcCCGuggcGGGCAGGCGg -3'
miRNA:   3'- uCUGGGCCuuuaaaGGU----CCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 5012 0.73 0.893576
Target:  5'- cGGACUCGGAcucgcgUCCGGGGUggGgGg -3'
miRNA:   3'- -UCUGGGCCUuuaa--AGGUCCCGuuUgC- -5'
10781 5' -50.5 NC_002794.1 + 35988 0.72 0.928766
Target:  5'- cGGACCCGGuuuuauugUCgCGGGGCucgGGCGg -3'
miRNA:   3'- -UCUGGGCCuuuaa---AG-GUCCCGu--UUGC- -5'
10781 5' -50.5 NC_002794.1 + 112441 0.72 0.924408
Target:  5'- aAGACCCGGAGA--UCCcGGcGCAG-CGu -3'
miRNA:   3'- -UCUGGGCCUUUaaAGGuCC-CGUUuGC- -5'
10781 5' -50.5 NC_002794.1 + 150435 0.72 0.935004
Target:  5'- uGGACCUGGAG---UCC-GGGCGGguGCGg -3'
miRNA:   3'- -UCUGGGCCUUuaaAGGuCCCGUU--UGC- -5'
10781 5' -50.5 NC_002794.1 + 31724 0.71 0.939929
Target:  5'- gGGAuCCCGGAugagaCCGggcGGGCGAACGa -3'
miRNA:   3'- -UCU-GGGCCUuuaaaGGU---CCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 186425 0.71 0.944607
Target:  5'- cGACCC-GAAAccaaUCCAGGGcCGAGCGc -3'
miRNA:   3'- uCUGGGcCUUUaa--AGGUCCC-GUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 178807 0.71 0.95323
Target:  5'- cGGCCCGGggGga-CC-GGGCAcuCGg -3'
miRNA:   3'- uCUGGGCCuuUaaaGGuCCCGUuuGC- -5'
10781 5' -50.5 NC_002794.1 + 148132 0.71 0.939929
Target:  5'- cGGGCgCGGGGccg-CCGGGGCGAggGCGg -3'
miRNA:   3'- -UCUGgGCCUUuaaaGGUCCCGUU--UGC- -5'
10781 5' -50.5 NC_002794.1 + 180960 0.7 0.967653
Target:  5'- cGACgCGGAcuccgUCGGGGCGAACa -3'
miRNA:   3'- uCUGgGCCUuuaaaGGUCCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 34318 0.7 0.967653
Target:  5'- cGACCCGGGAGgccgUCCGcaaGGCG-ACGg -3'
miRNA:   3'- uCUGGGCCUUUaa--AGGUc--CCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 105540 0.7 0.964388
Target:  5'- gAGAUCCGGcggcggCUcGGGCGAACGg -3'
miRNA:   3'- -UCUGGGCCuuuaaaGGuCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 118253 0.69 0.978599
Target:  5'- cGGgCUGGAGGUcggCCGGGGCGgcGGCGc -3'
miRNA:   3'- uCUgGGCCUUUAaa-GGUCCCGU--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.