Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10781 | 5' | -50.5 | NC_002794.1 | + | 118253 | 0.69 | 0.978599 |
Target: 5'- cGGgCUGGAGGUcggCCGGGGCGgcGGCGc -3' miRNA: 3'- uCUgGGCCUUUAaa-GGUCCCGU--UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 117207 | 0.69 | 0.978599 |
Target: 5'- cGGGCCCGGgcGgcUCCggccgcgucAGGGCGAcCGa -3' miRNA: 3'- -UCUGGGCCuuUaaAGG---------UCCCGUUuGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 133658 | 0.69 | 0.978599 |
Target: 5'- cGGACCCGaGGGAgggUCgCGGGGUuuuGACa -3' miRNA: 3'- -UCUGGGC-CUUUaa-AG-GUCCCGu--UUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 142430 | 0.69 | 0.982908 |
Target: 5'- cGAUuaGGAAAUUcUCCgAGGGUAAGCa -3' miRNA: 3'- uCUGggCCUUUAA-AGG-UCCCGUUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 43677 | 0.68 | 0.987645 |
Target: 5'- cGGGCCCGGGcgcggaccaugccgGAgaUCCAGGuGguGAUGa -3' miRNA: 3'- -UCUGGGCCU--------------UUaaAGGUCC-CguUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 95885 | 0.68 | 0.988101 |
Target: 5'- cGACCCGGcgg---CgAGGGCGcACGa -3' miRNA: 3'- uCUGGGCCuuuaaaGgUCCCGUuUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 98763 | 0.68 | 0.989528 |
Target: 5'- aGGugCUGGAGcucuacUCgCGGGGCGAGCu -3' miRNA: 3'- -UCugGGCCUUuaa---AG-GUCCCGUUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 124164 | 0.68 | 0.989528 |
Target: 5'- gGGGCCCGGGAGagcgUCGGGGaggGGACu -3' miRNA: 3'- -UCUGGGCCUUUaaa-GGUCCCg--UUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 113651 | 0.68 | 0.989663 |
Target: 5'- cGGCCCGGcguccucggcgUCCAGcgcGGCGAGCa -3' miRNA: 3'- uCUGGGCCuuuaa------AGGUC---CCGUUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 109120 | 0.68 | 0.991643 |
Target: 5'- cGGugCCGGu-GUUUCCgaacggaccgaggaGGGGgAGGCGg -3' miRNA: 3'- -UCugGGCCuuUAAAGG--------------UCCCgUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 121493 | 0.68 | 0.991979 |
Target: 5'- cGGACgCGGccuccgCCGGGGCGacGACGu -3' miRNA: 3'- -UCUGgGCCuuuaaaGGUCCCGU--UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 186202 | 0.68 | 0.991979 |
Target: 5'- -aACCgCGGGcc---CCAGGGCAGAUGg -3' miRNA: 3'- ucUGG-GCCUuuaaaGGUCCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 85952 | 0.68 | 0.991979 |
Target: 5'- cGACCCGGAA-----CGGGGCc-GCGg -3' miRNA: 3'- uCUGGGCCUUuaaagGUCCCGuuUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 93581 | 0.68 | 0.991979 |
Target: 5'- -aGCCgGGAGGUcUUCCAcuucGGGCAGAuCGg -3' miRNA: 3'- ucUGGgCCUUUA-AAGGU----CCCGUUU-GC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 129331 | 0.67 | 0.993021 |
Target: 5'- -cGCCCGGGgcggcGGUUUCCAgaacGGGguGACu -3' miRNA: 3'- ucUGGGCCU-----UUAAAGGU----CCCguUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 106407 | 0.67 | 0.993021 |
Target: 5'- cGGAcCCCGGcggcg-CCGGGGCucauGGCGc -3' miRNA: 3'- -UCU-GGGCCuuuaaaGGUCCCGu---UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 1073 | 0.67 | 0.993021 |
Target: 5'- --cCCCGGggGUucgUUUCGGGGCGuccugaggaGGCGu -3' miRNA: 3'- ucuGGGCCuuUA---AAGGUCCCGU---------UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 104434 | 0.67 | 0.993951 |
Target: 5'- cGGCCCGGAcgccgCCGcGGGCGgcccgagcccgGGCGg -3' miRNA: 3'- uCUGGGCCUuuaaaGGU-CCCGU-----------UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 141437 | 0.67 | 0.993951 |
Target: 5'- gGGGCgCCGGggGcg-CCGGGaGCGGcGCGg -3' miRNA: 3'- -UCUG-GGCCuuUaaaGGUCC-CGUU-UGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 119284 | 0.67 | 0.99478 |
Target: 5'- gGGugUugUGGAAccaggCCAGGGCGAGCu -3' miRNA: 3'- -UCugG--GCCUUuaaa-GGUCCCGUUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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