Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10781 | 5' | -50.5 | NC_002794.1 | + | 34318 | 0.7 | 0.967653 |
Target: 5'- cGACCCGGGAGgccgUCCGcaaGGCG-ACGg -3' miRNA: 3'- uCUGGGCCUUUaa--AGGUc--CCGUuUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 105540 | 0.7 | 0.964388 |
Target: 5'- gAGAUCCGGcggcggCUcGGGCGAACGg -3' miRNA: 3'- -UCUGGGCCuuuaaaGGuCCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 178807 | 0.71 | 0.95323 |
Target: 5'- cGGCCCGGggGga-CC-GGGCAcuCGg -3' miRNA: 3'- uCUGGGCCuuUaaaGGuCCCGUuuGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 186425 | 0.71 | 0.944607 |
Target: 5'- cGACCC-GAAAccaaUCCAGGGcCGAGCGc -3' miRNA: 3'- uCUGGGcCUUUaa--AGGUCCC-GUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 31724 | 0.71 | 0.939929 |
Target: 5'- gGGAuCCCGGAugagaCCGggcGGGCGAACGa -3' miRNA: 3'- -UCU-GGGCCUuuaaaGGU---CCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 148132 | 0.71 | 0.939929 |
Target: 5'- cGGGCgCGGGGccg-CCGGGGCGAggGCGg -3' miRNA: 3'- -UCUGgGCCUUuaaaGGUCCCGUU--UGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 150435 | 0.72 | 0.935004 |
Target: 5'- uGGACCUGGAG---UCC-GGGCGGguGCGg -3' miRNA: 3'- -UCUGGGCCUUuaaAGGuCCCGUU--UGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 35988 | 0.72 | 0.928766 |
Target: 5'- cGGACCCGGuuuuauugUCgCGGGGCucgGGCGg -3' miRNA: 3'- -UCUGGGCCuuuaa---AG-GUCCCGu--UUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 112441 | 0.72 | 0.924408 |
Target: 5'- aAGACCCGGAGA--UCCcGGcGCAG-CGu -3' miRNA: 3'- -UCUGGGCCUUUaaAGGuCC-CGUUuGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 86912 | 0.73 | 0.906646 |
Target: 5'- cGACCCGGugacgcCCGuggcGGGCAGGCGg -3' miRNA: 3'- uCUGGGCCuuuaaaGGU----CCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 8173 | 0.73 | 0.900232 |
Target: 5'- cGGGCCCGGcgucccgcccGGUUUCCcacccGGGCAAACa -3' miRNA: 3'- -UCUGGGCCu---------UUAAAGGu----CCCGUUUGc -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 5012 | 0.73 | 0.893576 |
Target: 5'- cGGACUCGGAcucgcgUCCGGGGUggGgGg -3' miRNA: 3'- -UCUGGGCCUuuaa--AGGUCCCGuuUgC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 115854 | 0.74 | 0.872193 |
Target: 5'- cGGGCCUGGGAcgcgcgagGggUCCGGGGCGucCGg -3' miRNA: 3'- -UCUGGGCCUU--------UaaAGGUCCCGUuuGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 147241 | 0.74 | 0.848793 |
Target: 5'- uGGGCCCGaGAGcacUCC-GGGCAGACGc -3' miRNA: 3'- -UCUGGGC-CUUuaaAGGuCCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 86803 | 0.75 | 0.814761 |
Target: 5'- gAGACCUaGGGGAgaUCCAGGGCc-GCGa -3' miRNA: 3'- -UCUGGG-CCUUUaaAGGUCCCGuuUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 23897 | 0.75 | 0.8058 |
Target: 5'- aGGGCCCGGGAgccgaGUgcagcagCguGGGCGAGCGa -3' miRNA: 3'- -UCUGGGCCUU-----UAaa-----GguCCCGUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 88244 | 0.85 | 0.319317 |
Target: 5'- cAGaACCCGGAAAUUUCCGGGuGgAAGCGg -3' miRNA: 3'- -UC-UGGGCCUUUAAAGGUCC-CgUUUGC- -5' |
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10781 | 5' | -50.5 | NC_002794.1 | + | 88279 | 1.1 | 0.010359 |
Target: 5'- gAGACCCGGAAAUUUCCAGGGCAAACGa -3' miRNA: 3'- -UCUGGGCCUUUAAAGGUCCCGUUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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