miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10781 5' -50.5 NC_002794.1 + 1073 0.67 0.993021
Target:  5'- --cCCCGGggGUucgUUUCGGGGCGuccugaggaGGCGu -3'
miRNA:   3'- ucuGGGCCuuUA---AAGGUCCCGU---------UUGC- -5'
10781 5' -50.5 NC_002794.1 + 1432 0.69 0.976165
Target:  5'- cGACCgGGAGGgggaCCGGGGC--GCGu -3'
miRNA:   3'- uCUGGgCCUUUaaa-GGUCCCGuuUGC- -5'
10781 5' -50.5 NC_002794.1 + 5012 0.73 0.893576
Target:  5'- cGGACUCGGAcucgcgUCCGGGGUggGgGg -3'
miRNA:   3'- -UCUGGGCCUuuaa--AGGUCCCGuuUgC- -5'
10781 5' -50.5 NC_002794.1 + 5765 0.67 0.995084
Target:  5'- aAGuACCCGGGAGUUgucaaaggagagagCCGGGGUcuGACc -3'
miRNA:   3'- -UC-UGGGCCUUUAAa-------------GGUCCCGu-UUGc -5'
10781 5' -50.5 NC_002794.1 + 8173 0.73 0.900232
Target:  5'- cGGGCCCGGcgucccgcccGGUUUCCcacccGGGCAAACa -3'
miRNA:   3'- -UCUGGGCCu---------UUAAAGGu----CCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 23897 0.75 0.8058
Target:  5'- aGGGCCCGGGAgccgaGUgcagcagCguGGGCGAGCGa -3'
miRNA:   3'- -UCUGGGCCUU-----UAaa-----GguCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 30054 0.66 0.998474
Target:  5'- gAGACCCGGGcccgcGGggUCCGGucgcccggucgacgaGGCGcGCGg -3'
miRNA:   3'- -UCUGGGCCU-----UUaaAGGUC---------------CCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 31724 0.71 0.939929
Target:  5'- gGGAuCCCGGAugagaCCGggcGGGCGAACGa -3'
miRNA:   3'- -UCU-GGGCCUuuaaaGGU---CCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 32586 0.66 0.997227
Target:  5'- cGGugCCGGGGccggggCCGGGGCcgGGGCc -3'
miRNA:   3'- -UCugGGCCUUuaaa--GGUCCCG--UUUGc -5'
10781 5' -50.5 NC_002794.1 + 34318 0.7 0.967653
Target:  5'- cGACCCGGGAGgccgUCCGcaaGGCG-ACGg -3'
miRNA:   3'- uCUGGGCCUUUaa--AGGUc--CCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 35816 0.66 0.998358
Target:  5'- cGGACCCGG---UUUCCGGGccGCcgccACGa -3'
miRNA:   3'- -UCUGGGCCuuuAAAGGUCC--CGuu--UGC- -5'
10781 5' -50.5 NC_002794.1 + 35988 0.72 0.928766
Target:  5'- cGGACCCGGuuuuauugUCgCGGGGCucgGGCGg -3'
miRNA:   3'- -UCUGGGCCuuuaa---AG-GUCCCGu--UUGC- -5'
10781 5' -50.5 NC_002794.1 + 40065 0.67 0.995513
Target:  5'- uGACUCGGggGagggaaaCCGGGGCGGGg- -3'
miRNA:   3'- uCUGGGCCuuUaaa----GGUCCCGUUUgc -5'
10781 5' -50.5 NC_002794.1 + 43677 0.68 0.987645
Target:  5'- cGGGCCCGGGcgcggaccaugccgGAgaUCCAGGuGguGAUGa -3'
miRNA:   3'- -UCUGGGCCU--------------UUaaAGGUCC-CguUUGC- -5'
10781 5' -50.5 NC_002794.1 + 49040 0.66 0.99673
Target:  5'- cGGCgCGGucGUcagcgUCCAGGGCGcGCa -3'
miRNA:   3'- uCUGgGCCuuUAa----AGGUCCCGUuUGc -5'
10781 5' -50.5 NC_002794.1 + 64788 0.67 0.996161
Target:  5'- cGACgCCGG----UUCCGcGGCGAGCGa -3'
miRNA:   3'- uCUG-GGCCuuuaAAGGUcCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 67049 0.66 0.997227
Target:  5'- cGGACCCGGcg---UCCGuGGGCuccuCGc -3'
miRNA:   3'- -UCUGGGCCuuuaaAGGU-CCCGuuu-GC- -5'
10781 5' -50.5 NC_002794.1 + 68759 0.67 0.996161
Target:  5'- uGAgCCGGGccg--CCGGGGCGccgGACGc -3'
miRNA:   3'- uCUgGGCCUuuaaaGGUCCCGU---UUGC- -5'
10781 5' -50.5 NC_002794.1 + 70293 0.66 0.997227
Target:  5'- cAGGCCgGGggGgc-CCGGGcGCGAAg- -3'
miRNA:   3'- -UCUGGgCCuuUaaaGGUCC-CGUUUgc -5'
10781 5' -50.5 NC_002794.1 + 85952 0.68 0.991979
Target:  5'- cGACCCGGAA-----CGGGGCc-GCGg -3'
miRNA:   3'- uCUGGGCCUUuaaagGUCCCGuuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.