miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10781 5' -50.5 NC_002794.1 + 86803 0.75 0.814761
Target:  5'- gAGACCUaGGGGAgaUCCAGGGCc-GCGa -3'
miRNA:   3'- -UCUGGG-CCUUUaaAGGUCCCGuuUGC- -5'
10781 5' -50.5 NC_002794.1 + 86912 0.73 0.906646
Target:  5'- cGACCCGGugacgcCCGuggcGGGCAGGCGg -3'
miRNA:   3'- uCUGGGCCuuuaaaGGU----CCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 88244 0.85 0.319317
Target:  5'- cAGaACCCGGAAAUUUCCGGGuGgAAGCGg -3'
miRNA:   3'- -UC-UGGGCCUUUAAAGGUCC-CgUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 88279 1.1 0.010359
Target:  5'- gAGACCCGGAAAUUUCCAGGGCAAACGa -3'
miRNA:   3'- -UCUGGGCCUUUAAAGGUCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 93581 0.68 0.991979
Target:  5'- -aGCCgGGAGGUcUUCCAcuucGGGCAGAuCGg -3'
miRNA:   3'- ucUGGgCCUUUA-AAGGU----CCCGUUU-GC- -5'
10781 5' -50.5 NC_002794.1 + 95885 0.68 0.988101
Target:  5'- cGACCCGGcgg---CgAGGGCGcACGa -3'
miRNA:   3'- uCUGGGCCuuuaaaGgUCCCGUuUGC- -5'
10781 5' -50.5 NC_002794.1 + 98763 0.68 0.989528
Target:  5'- aGGugCUGGAGcucuacUCgCGGGGCGAGCu -3'
miRNA:   3'- -UCugGGCCUUuaa---AG-GUCCCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 104434 0.67 0.993951
Target:  5'- cGGCCCGGAcgccgCCGcGGGCGgcccgagcccgGGCGg -3'
miRNA:   3'- uCUGGGCCUuuaaaGGU-CCCGU-----------UUGC- -5'
10781 5' -50.5 NC_002794.1 + 105540 0.7 0.964388
Target:  5'- gAGAUCCGGcggcggCUcGGGCGAACGg -3'
miRNA:   3'- -UCUGGGCCuuuaaaGGuCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 106365 0.66 0.997928
Target:  5'- cGGGCgCCGGuucgcgcggAGGGCAGACGg -3'
miRNA:   3'- -UCUG-GGCCuuuaaagg-UCCCGUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 106407 0.67 0.993021
Target:  5'- cGGAcCCCGGcggcg-CCGGGGCucauGGCGc -3'
miRNA:   3'- -UCU-GGGCCuuuaaaGGUCCCGu---UUGC- -5'
10781 5' -50.5 NC_002794.1 + 108034 0.66 0.99766
Target:  5'- cGGCCUGGAA--UUCCGGGuGCcguuCGu -3'
miRNA:   3'- uCUGGGCCUUuaAAGGUCC-CGuuu-GC- -5'
10781 5' -50.5 NC_002794.1 + 109120 0.68 0.991643
Target:  5'- cGGugCCGGu-GUUUCCgaacggaccgaggaGGGGgAGGCGg -3'
miRNA:   3'- -UCugGGCCuuUAAAGG--------------UCCCgUUUGC- -5'
10781 5' -50.5 NC_002794.1 + 112220 0.66 0.99766
Target:  5'- cGGCCCGcuccAGGgcgUCCAGGGCcgccgcGAACGc -3'
miRNA:   3'- uCUGGGCc---UUUaa-AGGUCCCG------UUUGC- -5'
10781 5' -50.5 NC_002794.1 + 112441 0.72 0.924408
Target:  5'- aAGACCCGGAGA--UCCcGGcGCAG-CGu -3'
miRNA:   3'- -UCUGGGCCUUUaaAGGuCC-CGUUuGC- -5'
10781 5' -50.5 NC_002794.1 + 113651 0.68 0.989663
Target:  5'- cGGCCCGGcguccucggcgUCCAGcgcGGCGAGCa -3'
miRNA:   3'- uCUGGGCCuuuaa------AGGUC---CCGUUUGc -5'
10781 5' -50.5 NC_002794.1 + 115854 0.74 0.872193
Target:  5'- cGGGCCUGGGAcgcgcgagGggUCCGGGGCGucCGg -3'
miRNA:   3'- -UCUGGGCCUU--------UaaAGGUCCCGUuuGC- -5'
10781 5' -50.5 NC_002794.1 + 117207 0.69 0.978599
Target:  5'- cGGGCCCGGgcGgcUCCggccgcgucAGGGCGAcCGa -3'
miRNA:   3'- -UCUGGGCCuuUaaAGG---------UCCCGUUuGC- -5'
10781 5' -50.5 NC_002794.1 + 118253 0.69 0.978599
Target:  5'- cGGgCUGGAGGUcggCCGGGGCGgcGGCGc -3'
miRNA:   3'- uCUgGGCCUUUAaa-GGUCCCGU--UUGC- -5'
10781 5' -50.5 NC_002794.1 + 119284 0.67 0.99478
Target:  5'- gGGugUugUGGAAccaggCCAGGGCGAGCu -3'
miRNA:   3'- -UCugG--GCCUUuaaa-GGUCCCGUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.