miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10783 3' -56.8 NC_002794.1 + 145594 0.66 0.915069
Target:  5'- cGGCCGGCUCCcgcGGAgUCGGgcGCGacgAGGa -3'
miRNA:   3'- -CUGGUCGAGG---CCU-GGUCuuCGU---UCCa -5'
10783 3' -56.8 NC_002794.1 + 109123 0.66 0.915069
Target:  5'- uGCCGGUguuuccgaaCGGACCgaggagggGGAGGCGGGGg -3'
miRNA:   3'- cUGGUCGag-------GCCUGG--------UCUUCGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 32594 0.66 0.915069
Target:  5'- gGGCCGGggCCgGGGCCGGGGcCGGGGa -3'
miRNA:   3'- -CUGGUCgaGG-CCUGGUCUUcGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 105181 0.66 0.915069
Target:  5'- ---uGGUUCUGGACCAGguGCAGGa- -3'
miRNA:   3'- cuggUCGAGGCCUGGUCuuCGUUCca -5'
10783 3' -56.8 NC_002794.1 + 21540 0.66 0.909188
Target:  5'- cGGCUAGCUCCGGAgCGGGgaaaaAGUccuccucGGGUu -3'
miRNA:   3'- -CUGGUCGAGGCCUgGUCU-----UCGu------UCCA- -5'
10783 3' -56.8 NC_002794.1 + 86485 0.66 0.909188
Target:  5'- nGACgGauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGgU--CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 34704 0.66 0.909188
Target:  5'- cGCCAGCaggcccgCCGGcGCCAcGAGGCGcGGg -3'
miRNA:   3'- cUGGUCGa------GGCC-UGGU-CUUCGUuCCa -5'
10783 3' -56.8 NC_002794.1 + 113735 0.66 0.903075
Target:  5'- cGACU-GCaccgaCCGGACCAGGcgcGCGAGGg -3'
miRNA:   3'- -CUGGuCGa----GGCCUGGUCUu--CGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 141459 0.66 0.896735
Target:  5'- cGGCgCGGCgUCCGGACUGGcGAGCAucGUg -3'
miRNA:   3'- -CUG-GUCG-AGGCCUGGUC-UUCGUucCA- -5'
10783 3' -56.8 NC_002794.1 + 94046 0.66 0.896735
Target:  5'- aGAgCGGCggCGGugCGGggGCGgcGGGg -3'
miRNA:   3'- -CUgGUCGagGCCugGUCuuCGU--UCCa -5'
10783 3' -56.8 NC_002794.1 + 3849 0.66 0.896735
Target:  5'- gGGCUugAGCcCCGGACCGGcauauAAGCcGGGUc -3'
miRNA:   3'- -CUGG--UCGaGGCCUGGUC-----UUCGuUCCA- -5'
10783 3' -56.8 NC_002794.1 + 145067 0.66 0.896735
Target:  5'- aGCUGGCggCgGGGCCGGAcAGCAcGGUg -3'
miRNA:   3'- cUGGUCGa-GgCCUGGUCU-UCGUuCCA- -5'
10783 3' -56.8 NC_002794.1 + 109058 0.66 0.890168
Target:  5'- aGACCuGUg-CGGACCAGgAAGgGGGGUc -3'
miRNA:   3'- -CUGGuCGagGCCUGGUC-UUCgUUCCA- -5'
10783 3' -56.8 NC_002794.1 + 113859 0.66 0.88338
Target:  5'- cGugCAGUUCCGG-CCAGgcGCGcucGGc -3'
miRNA:   3'- -CugGUCGAGGCCuGGUCuuCGUu--CCa -5'
10783 3' -56.8 NC_002794.1 + 128481 0.67 0.876373
Target:  5'- cACCGGgUCgCGGACCGGggGCc---- -3'
miRNA:   3'- cUGGUCgAG-GCCUGGUCuuCGuucca -5'
10783 3' -56.8 NC_002794.1 + 44289 0.67 0.869153
Target:  5'- -uCCGcGCccgCCGGGCCGgcGAGGCGGGGa -3'
miRNA:   3'- cuGGU-CGa--GGCCUGGU--CUUCGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 61307 0.67 0.861724
Target:  5'- -cCCAGCUCCGGACCauccacuaccgAGAcGCGAc-- -3'
miRNA:   3'- cuGGUCGAGGCCUGG-----------UCUuCGUUcca -5'
10783 3' -56.8 NC_002794.1 + 183409 0.67 0.846264
Target:  5'- --aCAGCcaCgGGACCAGAAGCGGGa- -3'
miRNA:   3'- cugGUCGa-GgCCUGGUCUUCGUUCca -5'
10783 3' -56.8 NC_002794.1 + 111588 0.67 0.838246
Target:  5'- uGGCCAGCUCgagCGGGgugaucucCCAGGccGGCGGGGc -3'
miRNA:   3'- -CUGGUCGAG---GCCU--------GGUCU--UCGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 86580 0.68 0.830044
Target:  5'- cGACCGGauuuUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGUCg---AGGCCUGGUcuUCGuUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.