Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10783 | 3' | -56.8 | NC_002794.1 | + | 85240 | 0.89 | 0.064773 |
Target: 5'- cGACCAGCUgCcGACCAGAAGCAAGGUg -3' miRNA: 3'- -CUGGUCGAgGcCUGGUCUUCGUUCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 20388 | 0.74 | 0.500971 |
Target: 5'- cGACgCGGUgcggCgGGACCGGGAGCGGGGc -3' miRNA: 3'- -CUG-GUCGa---GgCCUGGUCUUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 119752 | 0.73 | 0.549618 |
Target: 5'- uGCgCAGCUCCGGACCAGGucGCGGccGGc -3' miRNA: 3'- cUG-GUCGAGGCCUGGUCUu-CGUU--CCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 86268 | 0.72 | 0.589553 |
Target: 5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3' miRNA: 3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 86316 | 0.72 | 0.589553 |
Target: 5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3' miRNA: 3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 86628 | 0.72 | 0.589553 |
Target: 5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3' miRNA: 3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 86460 | 0.72 | 0.589553 |
Target: 5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3' miRNA: 3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 86124 | 0.72 | 0.589553 |
Target: 5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3' miRNA: 3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 23947 | 0.71 | 0.650214 |
Target: 5'- cGGCCgcggcgcacuuGGCUCCGaGCCAGcGGCGAGGc -3' miRNA: 3'- -CUGG-----------UCGAGGCcUGGUCuUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 136879 | 0.71 | 0.629968 |
Target: 5'- -cCCGGaUCUGGACguGGAGCAGGGa -3' miRNA: 3'- cuGGUCgAGGCCUGguCUUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 20626 | 0.7 | 0.729967 |
Target: 5'- -cCCGGCUCCGGcugccucgacgGCUGGugcGAGCAAGGg -3' miRNA: 3'- cuGGUCGAGGCC-----------UGGUC---UUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 87046 | 0.7 | 0.700439 |
Target: 5'- cGGCgCGGCUCgGGGCCGGGuccuguagcgacAGCAcGGUg -3' miRNA: 3'- -CUG-GUCGAGgCCUGGUCU------------UCGUuCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 148054 | 0.69 | 0.768136 |
Target: 5'- gGAUCGGCUCCGcGCUcuGGGAGCcGGGa -3' miRNA: 3'- -CUGGUCGAGGCcUGG--UCUUCGuUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 149205 | 0.69 | 0.786545 |
Target: 5'- -gUgAGCuaUCCGGcugGCCGGAAGCGAGGc -3' miRNA: 3'- cuGgUCG--AGGCC---UGGUCUUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 143407 | 0.69 | 0.75875 |
Target: 5'- cGACCGGCg-CGGGCCGGgcG-AAGGUc -3' miRNA: 3'- -CUGGUCGagGCCUGGUCuuCgUUCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 123675 | 0.69 | 0.75875 |
Target: 5'- cGCuCGGC-CCGGGCUGGGAGCAGGc- -3' miRNA: 3'- cUG-GUCGaGGCCUGGUCUUCGUUCca -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 43801 | 0.68 | 0.821666 |
Target: 5'- cGACCcgccGCUCCGGGcCCAGGcucuccAGCGAGuGg -3' miRNA: 3'- -CUGGu---CGAGGCCU-GGUCU------UCGUUC-Ca -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 101579 | 0.68 | 0.813119 |
Target: 5'- uGCCGGCcgCCGcGGCCGGggGgGcGGGUg -3' miRNA: 3'- cUGGUCGa-GGC-CUGGUCuuCgU-UCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 100339 | 0.68 | 0.801769 |
Target: 5'- cGGCCGGCUCUcGACCgccgagcuggagguGGAcuGCGAGGUg -3' miRNA: 3'- -CUGGUCGAGGcCUGG--------------UCUu-CGUUCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 112343 | 0.68 | 0.830044 |
Target: 5'- cGGCCGGCggcgCCGG-CgGcGggGCGGGGa -3' miRNA: 3'- -CUGGUCGa---GGCCuGgU-CuuCGUUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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