Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10783 | 3' | -56.8 | NC_002794.1 | + | 87046 | 0.7 | 0.700439 |
Target: 5'- cGGCgCGGCUCgGGGCCGGGuccuguagcgacAGCAcGGUg -3' miRNA: 3'- -CUG-GUCGAGgCCUGGUCU------------UCGUuCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 94046 | 0.66 | 0.896735 |
Target: 5'- aGAgCGGCggCGGugCGGggGCGgcGGGg -3' miRNA: 3'- -CUgGUCGagGCCugGUCuuCGU--UCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 100339 | 0.68 | 0.801769 |
Target: 5'- cGGCCGGCUCUcGACCgccgagcuggagguGGAcuGCGAGGUg -3' miRNA: 3'- -CUGGUCGAGGcCUGG--------------UCUu-CGUUCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 101579 | 0.68 | 0.813119 |
Target: 5'- uGCCGGCcgCCGcGGCCGGggGgGcGGGUg -3' miRNA: 3'- cUGGUCGa-GGC-CUGGUCuuCgU-UCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 105181 | 0.66 | 0.915069 |
Target: 5'- ---uGGUUCUGGACCAGguGCAGGa- -3' miRNA: 3'- cuggUCGAGGCCUGGUCuuCGUUCca -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 109058 | 0.66 | 0.890168 |
Target: 5'- aGACCuGUg-CGGACCAGgAAGgGGGGUc -3' miRNA: 3'- -CUGGuCGagGCCUGGUC-UUCgUUCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 109123 | 0.66 | 0.915069 |
Target: 5'- uGCCGGUguuuccgaaCGGACCgaggagggGGAGGCGGGGg -3' miRNA: 3'- cUGGUCGag-------GCCUGG--------UCUUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 111588 | 0.67 | 0.838246 |
Target: 5'- uGGCCAGCUCgagCGGGgugaucucCCAGGccGGCGGGGc -3' miRNA: 3'- -CUGGUCGAG---GCCU--------GGUCU--UCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 112343 | 0.68 | 0.830044 |
Target: 5'- cGGCCGGCggcgCCGG-CgGcGggGCGGGGa -3' miRNA: 3'- -CUGGUCGa---GGCCuGgU-CuuCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 113735 | 0.66 | 0.903075 |
Target: 5'- cGACU-GCaccgaCCGGACCAGGcgcGCGAGGg -3' miRNA: 3'- -CUGGuCGa----GGCCUGGUCUu--CGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 113859 | 0.66 | 0.88338 |
Target: 5'- cGugCAGUUCCGG-CCAGgcGCGcucGGc -3' miRNA: 3'- -CugGUCGAGGCCuGGUCuuCGUu--CCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 114760 | 0.68 | 0.830044 |
Target: 5'- cGCCGGCgCCGGuCCucGGcGGCGAGGa -3' miRNA: 3'- cUGGUCGaGGCCuGG--UCuUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 119752 | 0.73 | 0.549618 |
Target: 5'- uGCgCAGCUCCGGACCAGGucGCGGccGGc -3' miRNA: 3'- cUG-GUCGAGGCCUGGUCUu-CGUU--CCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 123675 | 0.69 | 0.75875 |
Target: 5'- cGCuCGGC-CCGGGCUGGGAGCAGGc- -3' miRNA: 3'- cUG-GUCGaGGCCUGGUCUUCGUUCca -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 128481 | 0.67 | 0.876373 |
Target: 5'- cACCGGgUCgCGGACCGGggGCc---- -3' miRNA: 3'- cUGGUCgAG-GCCUGGUCuuCGuucca -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 136879 | 0.71 | 0.629968 |
Target: 5'- -cCCGGaUCUGGACguGGAGCAGGGa -3' miRNA: 3'- cuGGUCgAGGCCUGguCUUCGUUCCa -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 141459 | 0.66 | 0.896735 |
Target: 5'- cGGCgCGGCgUCCGGACUGGcGAGCAucGUg -3' miRNA: 3'- -CUG-GUCG-AGGCCUGGUC-UUCGUucCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 143407 | 0.69 | 0.75875 |
Target: 5'- cGACCGGCg-CGGGCCGGgcG-AAGGUc -3' miRNA: 3'- -CUGGUCGagGCCUGGUCuuCgUUCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 145067 | 0.66 | 0.896735 |
Target: 5'- aGCUGGCggCgGGGCCGGAcAGCAcGGUg -3' miRNA: 3'- cUGGUCGa-GgCCUGGUCU-UCGUuCCA- -5' |
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10783 | 3' | -56.8 | NC_002794.1 | + | 145594 | 0.66 | 0.915069 |
Target: 5'- cGGCCGGCUCCcgcGGAgUCGGgcGCGacgAGGa -3' miRNA: 3'- -CUGGUCGAGG---CCU-GGUCuuCGU---UCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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