miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10783 3' -56.8 NC_002794.1 + 100339 0.68 0.801769
Target:  5'- cGGCCGGCUCUcGACCgccgagcuggagguGGAcuGCGAGGUg -3'
miRNA:   3'- -CUGGUCGAGGcCUGG--------------UCUu-CGUUCCA- -5'
10783 3' -56.8 NC_002794.1 + 94046 0.66 0.896735
Target:  5'- aGAgCGGCggCGGugCGGggGCGgcGGGg -3'
miRNA:   3'- -CUgGUCGagGCCugGUCuuCGU--UCCa -5'
10783 3' -56.8 NC_002794.1 + 87046 0.7 0.700439
Target:  5'- cGGCgCGGCUCgGGGCCGGGuccuguagcgacAGCAcGGUg -3'
miRNA:   3'- -CUG-GUCGAGgCCUGGUCU------------UCGUuCCA- -5'
10783 3' -56.8 NC_002794.1 + 86628 0.72 0.589553
Target:  5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86580 0.68 0.830044
Target:  5'- cGACCGGauuuUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGUCg---AGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86485 0.66 0.909188
Target:  5'- nGACgGauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGgU--CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86460 0.72 0.589553
Target:  5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86412 0.68 0.821666
Target:  5'- cGACCGgauGUUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86316 0.72 0.589553
Target:  5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86268 0.72 0.589553
Target:  5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86220 0.68 0.821666
Target:  5'- cGACCGgauGUUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 86124 0.72 0.589553
Target:  5'- cGACCGgauGCUCCGGACCG--AGCcGGGa -3'
miRNA:   3'- -CUGGU---CGAGGCCUGGUcuUCGuUCCa -5'
10783 3' -56.8 NC_002794.1 + 85240 0.89 0.064773
Target:  5'- cGACCAGCUgCcGACCAGAAGCAAGGUg -3'
miRNA:   3'- -CUGGUCGAgGcCUGGUCUUCGUUCCA- -5'
10783 3' -56.8 NC_002794.1 + 61307 0.67 0.861724
Target:  5'- -cCCAGCUCCGGACCauccacuaccgAGAcGCGAc-- -3'
miRNA:   3'- cuGGUCGAGGCCUGG-----------UCUuCGUUcca -5'
10783 3' -56.8 NC_002794.1 + 44289 0.67 0.869153
Target:  5'- -uCCGcGCccgCCGGGCCGgcGAGGCGGGGa -3'
miRNA:   3'- cuGGU-CGa--GGCCUGGU--CUUCGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 43801 0.68 0.821666
Target:  5'- cGACCcgccGCUCCGGGcCCAGGcucuccAGCGAGuGg -3'
miRNA:   3'- -CUGGu---CGAGGCCU-GGUCU------UCGUUC-Ca -5'
10783 3' -56.8 NC_002794.1 + 34704 0.66 0.909188
Target:  5'- cGCCAGCaggcccgCCGGcGCCAcGAGGCGcGGg -3'
miRNA:   3'- cUGGUCGa------GGCC-UGGU-CUUCGUuCCa -5'
10783 3' -56.8 NC_002794.1 + 32594 0.66 0.915069
Target:  5'- gGGCCGGggCCgGGGCCGGGGcCGGGGa -3'
miRNA:   3'- -CUGGUCgaGG-CCUGGUCUUcGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 23947 0.71 0.650214
Target:  5'- cGGCCgcggcgcacuuGGCUCCGaGCCAGcGGCGAGGc -3'
miRNA:   3'- -CUGG-----------UCGAGGCcUGGUCuUCGUUCCa -5'
10783 3' -56.8 NC_002794.1 + 21540 0.66 0.909188
Target:  5'- cGGCUAGCUCCGGAgCGGGgaaaaAGUccuccucGGGUu -3'
miRNA:   3'- -CUGGUCGAGGCCUgGUCU-----UCGu------UCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.