miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10783 5' -61.2 NC_002794.1 + 61156 0.66 0.762916
Target:  5'- gACcCCgagCgcgCGG-UCCGGaUCGGCGGCUg -3'
miRNA:   3'- -UGuGGa--Ga--GCCgAGGCC-AGUCGCCGA- -5'
10783 5' -61.2 NC_002794.1 + 105519 0.66 0.753807
Target:  5'- cGCGCCgUCcgaagCGGacgugagaUCCGG-CGGCGGCUc -3'
miRNA:   3'- -UGUGG-AGa----GCCg-------AGGCCaGUCGCCGA- -5'
10783 5' -61.2 NC_002794.1 + 129265 0.66 0.753807
Target:  5'- aGCGCCUCgUCGugaGCgggCCGGUCucucGGUGGUa -3'
miRNA:   3'- -UGUGGAG-AGC---CGa--GGCCAG----UCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 57408 0.66 0.753807
Target:  5'- gGCGCCcgCguggcCGGCgugCUGGUCGGCacGGCg -3'
miRNA:   3'- -UGUGGa-Ga----GCCGa--GGCCAGUCG--CCGa -5'
10783 5' -61.2 NC_002794.1 + 113797 0.66 0.753807
Target:  5'- gGCGCgCUCUCGGUccucgCCuucgCGGCGGCg -3'
miRNA:   3'- -UGUG-GAGAGCCGa----GGcca-GUCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 119688 0.66 0.753807
Target:  5'- gGCGUCUC-CGGCUgCUGGgcCGGCGGCc -3'
miRNA:   3'- -UGUGGAGaGCCGA-GGCCa-GUCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 61815 0.66 0.753807
Target:  5'- uCAUCUC-CGGCggccgCCGG-CGGcCGGCg -3'
miRNA:   3'- uGUGGAGaGCCGa----GGCCaGUC-GCCGa -5'
10783 5' -61.2 NC_002794.1 + 123985 0.66 0.751054
Target:  5'- cACGCCg--UGGCgCCGGUCaucuacgugaagcgGGCGGCc -3'
miRNA:   3'- -UGUGGagaGCCGaGGCCAG--------------UCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 184562 0.66 0.7446
Target:  5'- gACGCCUCaCGcGCcgCCGcGgCGGCGGCg -3'
miRNA:   3'- -UGUGGAGaGC-CGa-GGC-CaGUCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 112270 0.66 0.7446
Target:  5'- gGCGUCUCguccUCGGcCUCCGuGUCGgGCGGCc -3'
miRNA:   3'- -UGUGGAG----AGCC-GAGGC-CAGU-CGCCGa -5'
10783 5' -61.2 NC_002794.1 + 58734 0.66 0.7446
Target:  5'- cGCGCCUCagCgGGCUCaaCGGgCAGCuGGCg -3'
miRNA:   3'- -UGUGGAGa-G-CCGAG--GCCaGUCG-CCGa -5'
10783 5' -61.2 NC_002794.1 + 72870 0.66 0.735303
Target:  5'- uCGCCUCgacuccUCGGC-CgGGUC-GCGGCc -3'
miRNA:   3'- uGUGGAG------AGCCGaGgCCAGuCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 110631 0.66 0.735303
Target:  5'- gGCGCCgcggCGGCggggUCGGguuucucCGGCGGCUg -3'
miRNA:   3'- -UGUGGaga-GCCGa---GGCCa------GUCGCCGA- -5'
10783 5' -61.2 NC_002794.1 + 124381 0.66 0.735303
Target:  5'- uCGCCUCggucgCGGCggcgcgucgCCGGUCGucGgGGCg -3'
miRNA:   3'- uGUGGAGa----GCCGa--------GGCCAGU--CgCCGa -5'
10783 5' -61.2 NC_002794.1 + 96532 0.66 0.734369
Target:  5'- uGCGCCUCUgcCGcGCcgacgaaCCGGUCgacgaggagcgggAGCGGCUg -3'
miRNA:   3'- -UGUGGAGA--GC-CGa------GGCCAG-------------UCGCCGA- -5'
10783 5' -61.2 NC_002794.1 + 102625 0.66 0.725925
Target:  5'- cGCACCUggCGGUcauccgCCGGcUGGCGGCg -3'
miRNA:   3'- -UGUGGAgaGCCGa-----GGCCaGUCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 184601 0.66 0.725925
Target:  5'- -gGCCgcgggaUCGGCaaCGGcCAGCGGCa -3'
miRNA:   3'- ugUGGag----AGCCGagGCCaGUCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 179675 0.66 0.725925
Target:  5'- gGCACC-CgCGGCggcgaCGGUggCGGCGGCg -3'
miRNA:   3'- -UGUGGaGaGCCGag---GCCA--GUCGCCGa -5'
10783 5' -61.2 NC_002794.1 + 99922 0.66 0.725925
Target:  5'- cACGCCgugCGGCg-UGGUCuuGCGGCUg -3'
miRNA:   3'- -UGUGGagaGCCGagGCCAGu-CGCCGA- -5'
10783 5' -61.2 NC_002794.1 + 113442 0.66 0.713625
Target:  5'- cGCGCCgUCUCGGCgcUCagcaGGUCGGUguaggucguguccaGGCUc -3'
miRNA:   3'- -UGUGG-AGAGCCG--AGg---CCAGUCG--------------CCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.