miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10784 3' -56.1 NC_002794.1 + 140303 0.66 0.921624
Target:  5'- uCGGccaAGGCCU-GccGGCGgCUGGAGAAg -3'
miRNA:   3'- -GUC---UCUGGAuCuuCCGCgGACCUCUU- -5'
10784 3' -56.1 NC_002794.1 + 94405 0.66 0.921624
Target:  5'- gCGGGGACCgcGGugugGGGCGCgcccgacaacCUGGAGGc -3'
miRNA:   3'- -GUCUCUGGauCU----UCCGCG----------GACCUCUu -5'
10784 3' -56.1 NC_002794.1 + 121936 0.66 0.915943
Target:  5'- aAGAGGCCgacgcgcuGAucgaGCGCCUGGAGc- -3'
miRNA:   3'- gUCUCUGGau------CUuc--CGCGGACCUCuu -5'
10784 3' -56.1 NC_002794.1 + 187496 0.66 0.915943
Target:  5'- -cGAGGCCgcgcAGGcggccaGGGCGCCcgcGGAGGAa -3'
miRNA:   3'- guCUCUGGa---UCU------UCCGCGGa--CCUCUU- -5'
10784 3' -56.1 NC_002794.1 + 137803 0.66 0.903868
Target:  5'- aGGAG-CCgcaGGAAGGCGuUCUGGaAGAAc -3'
miRNA:   3'- gUCUCuGGa--UCUUCCGC-GGACC-UCUU- -5'
10784 3' -56.1 NC_002794.1 + 91139 0.66 0.897477
Target:  5'- aGGAGGCgcGGAcggugcugcuGGGCGCCgUGGAGGc -3'
miRNA:   3'- gUCUCUGgaUCU----------UCCGCGG-ACCUCUu -5'
10784 3' -56.1 NC_002794.1 + 83933 0.67 0.879786
Target:  5'- -cGAGACCgcuUAGAccgccuggaccgccuGGGcCGCCUGGAGc- -3'
miRNA:   3'- guCUCUGG---AUCU---------------UCC-GCGGACCUCuu -5'
10784 3' -56.1 NC_002794.1 + 124163 0.67 0.87693
Target:  5'- -cGGGGCCcGGGAGaGCGUCggGGAGGGg -3'
miRNA:   3'- guCUCUGGaUCUUC-CGCGGa-CCUCUU- -5'
10784 3' -56.1 NC_002794.1 + 115980 0.67 0.869637
Target:  5'- -cGGGACggGGAGcGGCGCCgcGGAGAc -3'
miRNA:   3'- guCUCUGgaUCUU-CCGCGGa-CCUCUu -5'
10784 3' -56.1 NC_002794.1 + 141434 0.67 0.862129
Target:  5'- gCGGGGGCgccGggGGCGCCgGGAGc- -3'
miRNA:   3'- -GUCUCUGgauCuuCCGCGGaCCUCuu -5'
10784 3' -56.1 NC_002794.1 + 187965 0.67 0.862129
Target:  5'- -cGGGACCUcGGGAGGCcGCUcauugcgGGAGAGa -3'
miRNA:   3'- guCUCUGGA-UCUUCCG-CGGa------CCUCUU- -5'
10784 3' -56.1 NC_002794.1 + 137426 0.69 0.77677
Target:  5'- gCGGAGACCgcGccGGCGCuCUGGAa-- -3'
miRNA:   3'- -GUCUCUGGauCuuCCGCG-GACCUcuu -5'
10784 3' -56.1 NC_002794.1 + 70269 0.7 0.748243
Target:  5'- aCGGAGGCCgcGAAGGCcggagagcagGCCgGGGGGg -3'
miRNA:   3'- -GUCUCUGGauCUUCCG----------CGGaCCUCUu -5'
10784 3' -56.1 NC_002794.1 + 106943 0.7 0.738518
Target:  5'- --cGGGCC--GgcGGCGCCUGGAGAc -3'
miRNA:   3'- gucUCUGGauCuuCCGCGGACCUCUu -5'
10784 3' -56.1 NC_002794.1 + 176717 0.7 0.698777
Target:  5'- -cGGGACC--GAcGGCGUCUGGAGAu -3'
miRNA:   3'- guCUCUGGauCUuCCGCGGACCUCUu -5'
10784 3' -56.1 NC_002794.1 + 116032 0.71 0.658137
Target:  5'- gCGGGGACCggagAGGAGaGCGCaggGGGGAGc -3'
miRNA:   3'- -GUCUCUGGa---UCUUC-CGCGga-CCUCUU- -5'
10784 3' -56.1 NC_002794.1 + 110489 0.78 0.325386
Target:  5'- gAGAGGCgguGgcGGCGCCUGGAGAAa -3'
miRNA:   3'- gUCUCUGgauCuuCCGCGGACCUCUU- -5'
10784 3' -56.1 NC_002794.1 + 85103 1.06 0.004808
Target:  5'- aCAGAGACCUAGAAGGCGCCUGGAGAAc -3'
miRNA:   3'- -GUCUCUGGAUCUUCCGCGGACCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.