miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 105367 0.66 0.998951
Target:  5'- -cAGA-GCUCCagcagguccgacagcUCGAGCUGUuCGGCCg -3'
miRNA:   3'- guUCUgCGAGG---------------AGCUUGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 157610 0.66 0.998951
Target:  5'- gGAGAuCGUUCUaagauaacggugugCGAGCUGUACAucACCg -3'
miRNA:   3'- gUUCU-GCGAGGa-------------GCUUGGCAUGU--UGG- -5'
10785 3' -50.5 NC_002794.1 + 14447 0.66 0.998867
Target:  5'- --cGAUGCUCCgCGGgcgACCGUGuCGAgCg -3'
miRNA:   3'- guuCUGCGAGGaGCU---UGGCAU-GUUgG- -5'
10785 3' -50.5 NC_002794.1 + 22118 0.66 0.998867
Target:  5'- uGGGACGCUCCcccUGGACaCGgaACGACg -3'
miRNA:   3'- gUUCUGCGAGGa--GCUUG-GCa-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 59283 0.66 0.998867
Target:  5'- gGAGAucCGCUCgccgCUCGAcGCCGcGCAGCg -3'
miRNA:   3'- gUUCU--GCGAG----GAGCU-UGGCaUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 122974 0.66 0.998867
Target:  5'- gGGGugGCUguacgcgcgCCUggugCGGGCCGUGCugacgGGCCg -3'
miRNA:   3'- gUUCugCGA---------GGA----GCUUGGCAUG-----UUGG- -5'
10785 3' -50.5 NC_002794.1 + 71937 0.66 0.998867
Target:  5'- cCAGGucgcgcaGCUCCUCGccgacguACCGgcgcauCAGCCg -3'
miRNA:   3'- -GUUCug-----CGAGGAGCu------UGGCau----GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 111728 0.66 0.998867
Target:  5'- aCGAGcgggcgaacGCGCUCgUCGAGCUG-GC-GCCg -3'
miRNA:   3'- -GUUC---------UGCGAGgAGCUUGGCaUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 121493 0.66 0.998867
Target:  5'- -cGGACGCggCCUCc-GCCGggGCGACg -3'
miRNA:   3'- guUCUGCGa-GGAGcuUGGCa-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 137439 0.66 0.998845
Target:  5'- --cGGCGCUCUggaaCGAcucggcggaauccGCCGUgucgGCGGCCu -3'
miRNA:   3'- guuCUGCGAGGa---GCU-------------UGGCA----UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 124542 0.66 0.998633
Target:  5'- --uGGCGCUgCggcUGaAGCCGUACAagGCCg -3'
miRNA:   3'- guuCUGCGAgGa--GC-UUGGCAUGU--UGG- -5'
10785 3' -50.5 NC_002794.1 + 112269 0.66 0.998633
Target:  5'- --cGGCGUcucgUCCUCGGccuCCGUgucggGCGGCCc -3'
miRNA:   3'- guuCUGCG----AGGAGCUu--GGCA-----UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 61257 0.66 0.998633
Target:  5'- ---cGCGCUCCucucccUCGAGcgcCCGUACGAgCa -3'
miRNA:   3'- guucUGCGAGG------AGCUU---GGCAUGUUgG- -5'
10785 3' -50.5 NC_002794.1 + 142071 0.66 0.998633
Target:  5'- -----gGCUCCUCGGucaaACCGUG--GCCg -3'
miRNA:   3'- guucugCGAGGAGCU----UGGCAUguUGG- -5'
10785 3' -50.5 NC_002794.1 + 137352 0.66 0.998358
Target:  5'- --cGGCGUcgucggggucuUCUUCGAGCCGgGCGagcGCCg -3'
miRNA:   3'- guuCUGCG-----------AGGAGCUUGGCaUGU---UGG- -5'
10785 3' -50.5 NC_002794.1 + 156639 0.66 0.998358
Target:  5'- ---cGCGCUUCgccauccuaGAACCGUACAgacucGCCg -3'
miRNA:   3'- guucUGCGAGGag-------CUUGGCAUGU-----UGG- -5'
10785 3' -50.5 NC_002794.1 + 86392 0.66 0.998358
Target:  5'- -cGGAUGCUCC--GGGCCGcgccCGACCg -3'
miRNA:   3'- guUCUGCGAGGagCUUGGCau--GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 86200 0.66 0.998358
Target:  5'- -cGGAUGCUCC--GGGCCGcgccCGACCg -3'
miRNA:   3'- guUCUGCGAGGagCUUGGCau--GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 67938 0.66 0.998358
Target:  5'- aCGGGGCGauggCCUCGA-CCGaggACGGCg -3'
miRNA:   3'- -GUUCUGCga--GGAGCUuGGCa--UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 112050 0.66 0.998358
Target:  5'- gUAGGuGCcCUCCUCGGgcGCCagcUGCAGCCg -3'
miRNA:   3'- -GUUC-UGcGAGGAGCU--UGGc--AUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.