miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 83725 1.12 0.00909
Target:  5'- uCAAGACGCUCCUCGAACCGUACAACCu -3'
miRNA:   3'- -GUUCUGCGAGGAGCUUGGCAUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 57044 0.85 0.365963
Target:  5'- gGAGACGCUCCUCGA-CCGccugcuCAACCu -3'
miRNA:   3'- gUUCUGCGAGGAGCUuGGCau----GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 145381 0.79 0.622361
Target:  5'- gGAGACGCUCCgcUCGGuggcgcGCCGcGCGGCCu -3'
miRNA:   3'- gUUCUGCGAGG--AGCU------UGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 123743 0.79 0.643055
Target:  5'- -cGGGCGUUCC-CGAGCCGUGCcGCUu -3'
miRNA:   3'- guUCUGCGAGGaGCUUGGCAUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 21942 0.78 0.694483
Target:  5'- --cGGCGCUCgUCGAagGCCGU-CGGCCg -3'
miRNA:   3'- guuCUGCGAGgAGCU--UGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 114321 0.77 0.734718
Target:  5'- gGAGGCGCUCCUCGuagucCCGccGCAGCg -3'
miRNA:   3'- gUUCUGCGAGGAGCuu---GGCa-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 193136 0.77 0.744574
Target:  5'- --cGGCaGCUCCUCGugcCCGUACAGCg -3'
miRNA:   3'- guuCUG-CGAGGAGCuu-GGCAUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 102058 0.77 0.763972
Target:  5'- ---cGCGCuUCUUCGAGCCGgGCGACCu -3'
miRNA:   3'- guucUGCG-AGGAGCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 148289 0.75 0.852337
Target:  5'- uCGAGcCGCUCgaCGuGCUGUACGACCc -3'
miRNA:   3'- -GUUCuGCGAGgaGCuUGGCAUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 46257 0.74 0.875226
Target:  5'- ----cCGCuUCCUCGGGCCGU-CGACCc -3'
miRNA:   3'- guucuGCG-AGGAGCUUGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 17779 0.73 0.896119
Target:  5'- -cAGACGCUCUUCGAgACCuUACGcugcACCg -3'
miRNA:   3'- guUCUGCGAGGAGCU-UGGcAUGU----UGG- -5'
10785 3' -50.5 NC_002794.1 + 131170 0.73 0.896119
Target:  5'- --cGGCGCccgUCUCGAGCCGgagACAGCa -3'
miRNA:   3'- guuCUGCGa--GGAGCUUGGCa--UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 182945 0.72 0.926207
Target:  5'- --cGGCGCcgggCUCGAGCCGacgGCGGCCg -3'
miRNA:   3'- guuCUGCGag--GAGCUUGGCa--UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 61500 0.72 0.94134
Target:  5'- uCAGGAa-CUCCUCGcccGCCGgacgGCGGCCg -3'
miRNA:   3'- -GUUCUgcGAGGAGCu--UGGCa---UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 75484 0.72 0.945899
Target:  5'- cCGAGACgGC-CCgcguaCGAGCCG-GCAACCa -3'
miRNA:   3'- -GUUCUG-CGaGGa----GCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 82763 0.72 0.945899
Target:  5'- -cGGAcuCGCUCCgCGAACCcucGCAACCg -3'
miRNA:   3'- guUCU--GCGAGGaGCUUGGca-UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 192757 0.71 0.950219
Target:  5'- ---cGCGCUCCUCcacgccgaAGCCGUACAccgaGCCg -3'
miRNA:   3'- guucUGCGAGGAGc-------UUGGCAUGU----UGG- -5'
10785 3' -50.5 NC_002794.1 + 134473 0.71 0.950219
Target:  5'- --cGGCGCUCUcgUCGccaGACCGcGCGACCc -3'
miRNA:   3'- guuCUGCGAGG--AGC---UUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 75770 0.71 0.954303
Target:  5'- gGAGAUGCUCaaacugUCGAuggcggaacACCGgcgACAACCg -3'
miRNA:   3'- gUUCUGCGAGg-----AGCU---------UGGCa--UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 135891 0.71 0.954303
Target:  5'- -cGGACaGCggaacaggucCCUCGAGCCGUACGgguugcggGCCa -3'
miRNA:   3'- guUCUG-CGa---------GGAGCUUGGCAUGU--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.