miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 71122 0.71 0.957779
Target:  5'- aGAGGCGCUCgUucaucuccgucagCGGGCUGUGCcGCCc -3'
miRNA:   3'- gUUCUGCGAGgA-------------GCUUGGCAUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 19951 0.71 0.958154
Target:  5'- gAAGACGUgcgggCUUCGAGCU--GCGGCCg -3'
miRNA:   3'- gUUCUGCGa----GGAGCUUGGcaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 86608 0.71 0.961776
Target:  5'- -cGGAUGCUCCggcUCGAGCC---CGACCg -3'
miRNA:   3'- guUCUGCGAGG---AGCUUGGcauGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 86248 0.71 0.961776
Target:  5'- -cGGAUGCUCCggcUCGAGCC---CGACCg -3'
miRNA:   3'- guUCUGCGAGG---AGCUUGGcauGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 86440 0.71 0.961776
Target:  5'- -cGGAUGCUCCggcUCGAGCC---CGACCg -3'
miRNA:   3'- guUCUGCGAGG---AGCUUGGcauGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 86488 0.71 0.965175
Target:  5'- -cGGAUGCUCCggacCGAGCCGggACGgaugcuccggGCCg -3'
miRNA:   3'- guUCUGCGAGGa---GCUUGGCa-UGU----------UGG- -5'
10785 3' -50.5 NC_002794.1 + 86320 0.71 0.965175
Target:  5'- -cGGAUGCUCCggacCGAGCCGggACGgaugcuccggGCCg -3'
miRNA:   3'- guUCUGCGAGGa---GCUUGGCa-UGU----------UGG- -5'
10785 3' -50.5 NC_002794.1 + 86128 0.71 0.965175
Target:  5'- -cGGAUGCUCCggacCGAGCCGggACGgaugcuccggGCCa -3'
miRNA:   3'- guUCUGCGAGGa---GCUUGGCa-UGU----------UGG- -5'
10785 3' -50.5 NC_002794.1 + 47213 0.71 0.965175
Target:  5'- --cGGCGCUCUUCGccAGCUGUuACAACa -3'
miRNA:   3'- guuCUGCGAGGAGC--UUGGCA-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 113981 0.7 0.968356
Target:  5'- --cGcCGCUCCUCGAgcaGCCGUuCGaggcGCCg -3'
miRNA:   3'- guuCuGCGAGGAGCU---UGGCAuGU----UGG- -5'
10785 3' -50.5 NC_002794.1 + 102527 0.7 0.971325
Target:  5'- gCGGGACGaccuCUUCUCGGGCCGcguggagacgGCGGCCc -3'
miRNA:   3'- -GUUCUGC----GAGGAGCUUGGCa---------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 149959 0.7 0.971325
Target:  5'- uCGGGACGUggCCgaccugccgCGGACCG-GCGGCCg -3'
miRNA:   3'- -GUUCUGCGa-GGa--------GCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 123477 0.7 0.974088
Target:  5'- aCGAGGCGCUgCggaccagcgUGGACCuGUGCAucGCCg -3'
miRNA:   3'- -GUUCUGCGAgGa--------GCUUGG-CAUGU--UGG- -5'
10785 3' -50.5 NC_002794.1 + 63192 0.7 0.974088
Target:  5'- ---cGCGCUCCUgGGucugACCGU-CGACCu -3'
miRNA:   3'- guucUGCGAGGAgCU----UGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 119161 0.7 0.976405
Target:  5'- gCAGGucCGCgaaggCCUCGGggaggugGCCGuUACAGCCu -3'
miRNA:   3'- -GUUCu-GCGa----GGAGCU-------UGGC-AUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 182973 0.7 0.976653
Target:  5'- -----gGCUCCucguUCGAGCCG-ACGGCCg -3'
miRNA:   3'- guucugCGAGG----AGCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 147548 0.7 0.976653
Target:  5'- --cGGCGCaCCUCucACCGaACGACCu -3'
miRNA:   3'- guuCUGCGaGGAGcuUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 52566 0.7 0.976653
Target:  5'- uGAGACGaccggcgCCUCaGAGCCGcagcacGCAGCCg -3'
miRNA:   3'- gUUCUGCga-----GGAG-CUUGGCa-----UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 52796 0.7 0.976653
Target:  5'- uCGAGcCGCUCgUCGGacGCCG-GCAGCUc -3'
miRNA:   3'- -GUUCuGCGAGgAGCU--UGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 122510 0.7 0.979026
Target:  5'- gCAGGAgGgCUUCUCcGGCCGgaucgACGACCa -3'
miRNA:   3'- -GUUCUgC-GAGGAGcUUGGCa----UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.