miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 86392 0.66 0.998358
Target:  5'- -cGGAUGCUCC--GGGCCGcgccCGACCg -3'
miRNA:   3'- guUCUGCGAGGagCUUGGCau--GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 156639 0.66 0.998358
Target:  5'- ---cGCGCUUCgccauccuaGAACCGUACAgacucGCCg -3'
miRNA:   3'- guucUGCGAGGag-------CUUGGCAUGU-----UGG- -5'
10785 3' -50.5 NC_002794.1 + 137352 0.66 0.998358
Target:  5'- --cGGCGUcgucggggucuUCUUCGAGCCGgGCGagcGCCg -3'
miRNA:   3'- guuCUGCG-----------AGGAGCUUGGCaUGU---UGG- -5'
10785 3' -50.5 NC_002794.1 + 86560 0.66 0.998358
Target:  5'- -cGGAUGCUCC--GGGCCGcgccCGACCg -3'
miRNA:   3'- guUCUGCGAGGagCUUGGCau--GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 51280 0.66 0.998328
Target:  5'- -cAGGCGCggcccgCCcgaacgggcaggcUCGAACCGgucuagaagACGACCg -3'
miRNA:   3'- guUCUGCGa-----GG-------------AGCUUGGCa--------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 143184 0.66 0.998038
Target:  5'- --cGGCGgUUCUCGA--CGUGCAGCUu -3'
miRNA:   3'- guuCUGCgAGGAGCUugGCAUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 137701 0.66 0.998038
Target:  5'- gAAGGC-CUCCggcUUGAGCCG-GCAACUu -3'
miRNA:   3'- gUUCUGcGAGG---AGCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 78887 0.66 0.998038
Target:  5'- --cGAC-CUCCUCG-GCCGggcGCAACa -3'
miRNA:   3'- guuCUGcGAGGAGCuUGGCa--UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 70317 0.66 0.998038
Target:  5'- aGAGcCGCUUCgcccgCGAagacGCCG-ACGGCCg -3'
miRNA:   3'- gUUCuGCGAGGa----GCU----UGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 49271 0.66 0.998038
Target:  5'- -cGGGCGCUCCaaCGGcCCGgGCGccGCCg -3'
miRNA:   3'- guUCUGCGAGGa-GCUuGGCaUGU--UGG- -5'
10785 3' -50.5 NC_002794.1 + 19796 0.66 0.998038
Target:  5'- --uGACGCUgcucCgCUCGGACCGcGC-GCCg -3'
miRNA:   3'- guuCUGCGA----G-GAGCUUGGCaUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 195560 0.66 0.997668
Target:  5'- uGAGcCGC-CC-CGAGCCGcccCGACCg -3'
miRNA:   3'- gUUCuGCGaGGaGCUUGGCau-GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 121964 0.66 0.997668
Target:  5'- gGAG-CGCUCCgugCGGcucggucccGCCGagcGCGGCCg -3'
miRNA:   3'- gUUCuGCGAGGa--GCU---------UGGCa--UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 193375 0.66 0.997668
Target:  5'- aCGGGccGCGCUCCUC--GCCGU-CGuCCg -3'
miRNA:   3'- -GUUC--UGCGAGGAGcuUGGCAuGUuGG- -5'
10785 3' -50.5 NC_002794.1 + 149674 0.66 0.997668
Target:  5'- gGGGGCGCgucgCgCUCGAcugGCCGcgGgGGCCg -3'
miRNA:   3'- gUUCUGCGa---G-GAGCU---UGGCa-UgUUGG- -5'
10785 3' -50.5 NC_002794.1 + 151967 0.66 0.997668
Target:  5'- cCGGG-UGCUCCUCGGcCCGggACGuggucuACCg -3'
miRNA:   3'- -GUUCuGCGAGGAGCUuGGCa-UGU------UGG- -5'
10785 3' -50.5 NC_002794.1 + 90585 0.66 0.997628
Target:  5'- -cGGGCGCUCCagucccgUCGGGCCucgACggUCg -3'
miRNA:   3'- guUCUGCGAGG-------AGCUUGGca-UGuuGG- -5'
10785 3' -50.5 NC_002794.1 + 92170 0.66 0.997628
Target:  5'- --uGACGCUCUUC-AGCCGcuuccugUGCGACg -3'
miRNA:   3'- guuCUGCGAGGAGcUUGGC-------AUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 23630 0.66 0.997505
Target:  5'- -cGGACGCgcggcCCUCGAcccccuccgccccCCGaGCGACCg -3'
miRNA:   3'- guUCUGCGa----GGAGCUu------------GGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 70883 0.67 0.997419
Target:  5'- --cGGCgGCUCCUCGAgcgccaggucggugaGCaCGU-CGGCCa -3'
miRNA:   3'- guuCUG-CGAGGAGCU---------------UG-GCAuGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.