miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 108946 0.67 0.997241
Target:  5'- -cGGACguGCUUCUCGA-CCGUcaucuuacgGCAGCUg -3'
miRNA:   3'- guUCUG--CGAGGAGCUuGGCA---------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 191704 0.67 0.997241
Target:  5'- -cGGACcacCUCCUCGucguCCGaGCGGCCc -3'
miRNA:   3'- guUCUGc--GAGGAGCuu--GGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 147593 0.67 0.997241
Target:  5'- cCGAGGCGCUCg-CGG--UGUGCAAUCu -3'
miRNA:   3'- -GUUCUGCGAGgaGCUugGCAUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 8125 0.67 0.997241
Target:  5'- --cGGCGgcCUCCUCGGugACCGgcgACGGCa -3'
miRNA:   3'- guuCUGC--GAGGAGCU--UGGCa--UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 141718 0.67 0.997241
Target:  5'- --cGGCGUUCgC-CGAuCCGaUGCAACCg -3'
miRNA:   3'- guuCUGCGAG-GaGCUuGGC-AUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 83169 0.67 0.997241
Target:  5'- -cGGACGCUCUcggUCGAGCgCG-GCuucGCCa -3'
miRNA:   3'- guUCUGCGAGG---AGCUUG-GCaUGu--UGG- -5'
10785 3' -50.5 NC_002794.1 + 64531 0.67 0.997241
Target:  5'- -cAGAuCGag-CUCGAGgCGUACAACCa -3'
miRNA:   3'- guUCU-GCgagGAGCUUgGCAUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 156870 0.67 0.996751
Target:  5'- uCGAGGCGC-CUUCGAcUCGU-CAACg -3'
miRNA:   3'- -GUUCUGCGaGGAGCUuGGCAuGUUGg -5'
10785 3' -50.5 NC_002794.1 + 107301 0.67 0.996751
Target:  5'- --cGACGCUCCUCGcgggggcGCCGUccGCGc-- -3'
miRNA:   3'- guuCUGCGAGGAGCu------UGGCA--UGUugg -5'
10785 3' -50.5 NC_002794.1 + 145852 0.67 0.996751
Target:  5'- ---cACGCUCgaCGAGCCGccgagggccGCGACCg -3'
miRNA:   3'- guucUGCGAGgaGCUUGGCa--------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 114256 0.67 0.996751
Target:  5'- aAAGAgCGuCUCCgggggCGggUCGUGCugcACCa -3'
miRNA:   3'- gUUCU-GC-GAGGa----GCuuGGCAUGu--UGG- -5'
10785 3' -50.5 NC_002794.1 + 190226 0.67 0.996751
Target:  5'- -cGGGCGCUCCggUCGuccauGugCGgACAGCCc -3'
miRNA:   3'- guUCUGCGAGG--AGC-----UugGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 89962 0.67 0.996699
Target:  5'- uCGAGGCGU---UCGGACCGUGgugcgccggcguuCGACCg -3'
miRNA:   3'- -GUUCUGCGaggAGCUUGGCAU-------------GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 13785 0.67 0.996192
Target:  5'- cCGGGugGCUCCggccgucuucgCGAcgggcccgGCCGgcggcgACGGCCu -3'
miRNA:   3'- -GUUCugCGAGGa----------GCU--------UGGCa-----UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 22607 0.67 0.996192
Target:  5'- uCGGGACGCUCgagccgaUCGGGCCGcucgagGCGcucggACCg -3'
miRNA:   3'- -GUUCUGCGAGg------AGCUUGGCa-----UGU-----UGG- -5'
10785 3' -50.5 NC_002794.1 + 37807 0.67 0.996192
Target:  5'- aCGAGACGgUCgCUCccGCCGUcACGGCg -3'
miRNA:   3'- -GUUCUGCgAG-GAGcuUGGCA-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 99711 0.67 0.995556
Target:  5'- -cGGAUGUUCUuucgCGAccgGCCGUACGugCu -3'
miRNA:   3'- guUCUGCGAGGa---GCU---UGGCAUGUugG- -5'
10785 3' -50.5 NC_002794.1 + 58844 0.67 0.995556
Target:  5'- gAGGACGCcgacgugcagcUCgUCGccGACCG-GCAGCCg -3'
miRNA:   3'- gUUCUGCG-----------AGgAGC--UUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 141797 0.67 0.995556
Target:  5'- -cGGGCGCgggucggCCUCGGacaGCCGguuggACGACg -3'
miRNA:   3'- guUCUGCGa------GGAGCU---UGGCa----UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 58955 0.67 0.995556
Target:  5'- aCGAGcCGCUCUUCGuggaGGCCGaGC-GCCu -3'
miRNA:   3'- -GUUCuGCGAGGAGC----UUGGCaUGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.