miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 2177 0.7 0.979253
Target:  5'- cCGGGGCGUguUCCUCGAcaaaaauggggaaguCCGagACGACCg -3'
miRNA:   3'- -GUUCUGCG--AGGAGCUu--------------GGCa-UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 8125 0.67 0.997241
Target:  5'- --cGGCGgcCUCCUCGGugACCGgcgACGGCa -3'
miRNA:   3'- guuCUGC--GAGGAGCU--UGGCa--UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 12499 0.68 0.989693
Target:  5'- ---cACGUUCC-CGAGCCGcuCGACCg -3'
miRNA:   3'- guucUGCGAGGaGCUUGGCauGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 13180 0.66 0.998358
Target:  5'- cCAGGACGaCUCgUCGGAgcUCGUGCucacGCUc -3'
miRNA:   3'- -GUUCUGC-GAGgAGCUU--GGCAUGu---UGG- -5'
10785 3' -50.5 NC_002794.1 + 13785 0.67 0.996192
Target:  5'- cCGGGugGCUCCggccgucuucgCGAcgggcccgGCCGgcggcgACGGCCu -3'
miRNA:   3'- -GUUCugCGAGGa----------GCU--------UGGCa-----UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 14447 0.66 0.998867
Target:  5'- --cGAUGCUCCgCGGgcgACCGUGuCGAgCg -3'
miRNA:   3'- guuCUGCGAGGaGCU---UGGCAU-GUUgG- -5'
10785 3' -50.5 NC_002794.1 + 14559 0.67 0.994835
Target:  5'- --cGACGCgcgggaggCGAGCCGgcCGACCg -3'
miRNA:   3'- guuCUGCGagga----GCUUGGCauGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 17779 0.73 0.896119
Target:  5'- -cAGACGCUCUUCGAgACCuUACGcugcACCg -3'
miRNA:   3'- guUCUGCGAGGAGCU-UGGcAUGU----UGG- -5'
10785 3' -50.5 NC_002794.1 + 18269 0.68 0.992091
Target:  5'- gCGAGAUGCgcggcgccgagCCuUCGAACCGaGCcGCCc -3'
miRNA:   3'- -GUUCUGCGa----------GG-AGCUUGGCaUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 19796 0.66 0.998038
Target:  5'- --uGACGCUgcucCgCUCGGACCGcGC-GCCg -3'
miRNA:   3'- guuCUGCGA----G-GAGCUUGGCaUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 19951 0.71 0.958154
Target:  5'- gAAGACGUgcgggCUUCGAGCU--GCGGCCg -3'
miRNA:   3'- gUUCUGCGa----GGAGCUUGGcaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 21942 0.78 0.694483
Target:  5'- --cGGCGCUCgUCGAagGCCGU-CGGCCg -3'
miRNA:   3'- guuCUGCGAGgAGCU--UGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 22118 0.66 0.998867
Target:  5'- uGGGACGCUCCcccUGGACaCGgaACGACg -3'
miRNA:   3'- gUUCUGCGAGGa--GCUUG-GCa-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 22607 0.67 0.996192
Target:  5'- uCGGGACGCUCgagccgaUCGGGCCGcucgagGCGcucggACCg -3'
miRNA:   3'- -GUUCUGCGAGg------AGCUUGGCa-----UGU-----UGG- -5'
10785 3' -50.5 NC_002794.1 + 23630 0.66 0.997505
Target:  5'- -cGGACGCgcggcCCUCGAcccccuccgccccCCGaGCGACCg -3'
miRNA:   3'- guUCUGCGa----GGAGCUu------------GGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 25521 0.68 0.990834
Target:  5'- --cGACGCUgacggagCCUCGAugaGCCGgccagucuCAGCCg -3'
miRNA:   3'- guuCUGCGA-------GGAGCU---UGGCau------GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 34301 0.68 0.992091
Target:  5'- gGAGcucuACGaCUCCUCGAcccgggagGCCGUccgcaaggcgACGGCCg -3'
miRNA:   3'- gUUC----UGC-GAGGAGCU--------UGGCA----------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 36617 0.69 0.981215
Target:  5'- cCGAGAC-CUgCUCGAcgacgaacGCCGUcggcuccgGCAGCCg -3'
miRNA:   3'- -GUUCUGcGAgGAGCU--------UGGCA--------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 37807 0.67 0.996192
Target:  5'- aCGAGACGgUCgCUCccGCCGUcACGGCg -3'
miRNA:   3'- -GUUCUGCgAG-GAGcuUGGCA-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 38188 0.68 0.989693
Target:  5'- gAAGGCGUUCCUgGucUCGUcguucgcgcgcGCGACCg -3'
miRNA:   3'- gUUCUGCGAGGAgCuuGGCA-----------UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.