miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 38619 0.66 0.998358
Target:  5'- -cGGGCGCgUCC-CGAcucGCCgGUGCGGCg -3'
miRNA:   3'- guUCUGCG-AGGaGCU---UGG-CAUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 45656 0.69 0.985075
Target:  5'- -cAGAaGCUCCgCGGGCCGcagaagaGCAGCCa -3'
miRNA:   3'- guUCUgCGAGGaGCUUGGCa------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 46200 0.67 0.994835
Target:  5'- ---cGCGCUCgCUCGccGCCGUucCGGCCa -3'
miRNA:   3'- guucUGCGAG-GAGCu-UGGCAu-GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 46257 0.74 0.875226
Target:  5'- ----cCGCuUCCUCGGGCCGU-CGACCc -3'
miRNA:   3'- guucuGCG-AGGAGCUUGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 47213 0.71 0.965175
Target:  5'- --cGGCGCUCUUCGccAGCUGUuACAACa -3'
miRNA:   3'- guuCUGCGAGGAGC--UUGGCA-UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 49271 0.66 0.998038
Target:  5'- -cGGGCGCUCCaaCGGcCCGgGCGccGCCg -3'
miRNA:   3'- guUCUGCGAGGa-GCUuGGCaUGU--UGG- -5'
10785 3' -50.5 NC_002794.1 + 51280 0.66 0.998328
Target:  5'- -cAGGCGCggcccgCCcgaacgggcaggcUCGAACCGgucuagaagACGACCg -3'
miRNA:   3'- guUCUGCGa-----GG-------------AGCUUGGCa--------UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 52566 0.7 0.976653
Target:  5'- uGAGACGaccggcgCCUCaGAGCCGcagcacGCAGCCg -3'
miRNA:   3'- gUUCUGCga-----GGAG-CUUGGCa-----UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 52796 0.7 0.976653
Target:  5'- uCGAGcCGCUCgUCGGacGCCG-GCAGCUc -3'
miRNA:   3'- -GUUCuGCGAGgAGCU--UGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 57044 0.85 0.365963
Target:  5'- gGAGACGCUCCUCGA-CCGccugcuCAACCu -3'
miRNA:   3'- gUUCUGCGAGGAGCUuGGCau----GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 58844 0.67 0.995556
Target:  5'- gAGGACGCcgacgugcagcUCgUCGccGACCG-GCAGCCg -3'
miRNA:   3'- gUUCUGCG-----------AGgAGC--UUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 58955 0.67 0.995556
Target:  5'- aCGAGcCGCUCUUCGuggaGGCCGaGC-GCCu -3'
miRNA:   3'- -GUUCuGCGAGGAGC----UUGGCaUGuUGG- -5'
10785 3' -50.5 NC_002794.1 + 59283 0.66 0.998867
Target:  5'- gGAGAucCGCUCgccgCUCGAcGCCGcGCAGCg -3'
miRNA:   3'- gUUCU--GCGAG----GAGCU-UGGCaUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 61042 0.69 0.984898
Target:  5'- -cAGAUGCUCCUgGGcauccCCGUGCAcgggcacugcuacACCg -3'
miRNA:   3'- guUCUGCGAGGAgCUu----GGCAUGU-------------UGG- -5'
10785 3' -50.5 NC_002794.1 + 61257 0.66 0.998633
Target:  5'- ---cGCGCUCCucucccUCGAGcgcCCGUACGAgCa -3'
miRNA:   3'- guucUGCGAGG------AGCUU---GGCAUGUUgG- -5'
10785 3' -50.5 NC_002794.1 + 61500 0.72 0.94134
Target:  5'- uCAGGAa-CUCCUCGcccGCCGgacgGCGGCCg -3'
miRNA:   3'- -GUUCUgcGAGGAGCu--UGGCa---UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 62472 0.66 0.998358
Target:  5'- uCGAGGCGCgCCUCGAcgaGCgCGaguggACGGCg -3'
miRNA:   3'- -GUUCUGCGaGGAGCU---UG-GCa----UGUUGg -5'
10785 3' -50.5 NC_002794.1 + 62727 0.68 0.990954
Target:  5'- gCGAGACGCaCUUCccGCCGcccGCGGCCg -3'
miRNA:   3'- -GUUCUGCGaGGAGcuUGGCa--UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 63192 0.7 0.974088
Target:  5'- ---cGCGCUCCUgGGucugACCGU-CGACCu -3'
miRNA:   3'- guucUGCGAGGAgCU----UGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 64531 0.67 0.997241
Target:  5'- -cAGAuCGag-CUCGAGgCGUACAACCa -3'
miRNA:   3'- guUCU-GCgagGAGCUUgGCAUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.