miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 3' -50.5 NC_002794.1 + 195560 0.66 0.997668
Target:  5'- uGAGcCGC-CC-CGAGCCGcccCGACCg -3'
miRNA:   3'- gUUCuGCGaGGaGCUUGGCau-GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 193375 0.66 0.997668
Target:  5'- aCGGGccGCGCUCCUC--GCCGU-CGuCCg -3'
miRNA:   3'- -GUUC--UGCGAGGAGcuUGGCAuGUuGG- -5'
10785 3' -50.5 NC_002794.1 + 193136 0.77 0.744574
Target:  5'- --cGGCaGCUCCUCGugcCCGUACAGCg -3'
miRNA:   3'- guuCUG-CGAGGAGCuu-GGCAUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 192982 0.68 0.992091
Target:  5'- cCAGGGCGCggucgcCCUCGcccGGCgUGUGCAGCg -3'
miRNA:   3'- -GUUCUGCGa-----GGAGC---UUG-GCAUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 192757 0.71 0.950219
Target:  5'- ---cGCGCUCCUCcacgccgaAGCCGUACAccgaGCCg -3'
miRNA:   3'- guucUGCGAGGAGc-------UUGGCAUGU----UGG- -5'
10785 3' -50.5 NC_002794.1 + 191704 0.67 0.997241
Target:  5'- -cGGACcacCUCCUCGucguCCGaGCGGCCc -3'
miRNA:   3'- guUCUGc--GAGGAGCuu--GGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 190226 0.67 0.996751
Target:  5'- -cGGGCGCUCCggUCGuccauGugCGgACAGCCc -3'
miRNA:   3'- guUCUGCGAGG--AGC-----UugGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 187513 0.67 0.994835
Target:  5'- cCAGGGCGC-CCgCGGaggaacuccccGCCGccGCGACCg -3'
miRNA:   3'- -GUUCUGCGaGGaGCU-----------UGGCa-UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 186836 0.68 0.990954
Target:  5'- gAAGGCGC-CCgacagcgcgCGGgcgcuGCCGUGCAGCa -3'
miRNA:   3'- gUUCUGCGaGGa--------GCU-----UGGCAUGUUGg -5'
10785 3' -50.5 NC_002794.1 + 185403 0.68 0.994023
Target:  5'- gAGGGCGCgggCC-CGAccGCCGU-CGACUc -3'
miRNA:   3'- gUUCUGCGa--GGaGCU--UGGCAuGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 182973 0.7 0.976653
Target:  5'- -----gGCUCCucguUCGAGCCG-ACGGCCg -3'
miRNA:   3'- guucugCGAGG----AGCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 182945 0.72 0.926207
Target:  5'- --cGGCGCcgggCUCGAGCCGacgGCGGCCg -3'
miRNA:   3'- guuCUGCGag--GAGCUUGGCa--UGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 177619 0.67 0.994835
Target:  5'- --cGAuCGCUCCUCGAcgACgaGgcCGACCa -3'
miRNA:   3'- guuCU-GCGAGGAGCU--UGg-CauGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 157610 0.66 0.998951
Target:  5'- gGAGAuCGUUCUaagauaacggugugCGAGCUGUACAucACCg -3'
miRNA:   3'- gUUCU-GCGAGGa-------------GCUUGGCAUGU--UGG- -5'
10785 3' -50.5 NC_002794.1 + 156870 0.67 0.996751
Target:  5'- uCGAGGCGC-CUUCGAcUCGU-CAACg -3'
miRNA:   3'- -GUUCUGCGaGGAGCUuGGCAuGUUGg -5'
10785 3' -50.5 NC_002794.1 + 156639 0.66 0.998358
Target:  5'- ---cGCGCUUCgccauccuaGAACCGUACAgacucGCCg -3'
miRNA:   3'- guucUGCGAGGag-------CUUGGCAUGU-----UGG- -5'
10785 3' -50.5 NC_002794.1 + 152125 0.68 0.990954
Target:  5'- --cGcCGCUCCgcccugcCGAGCCGguuCAACCc -3'
miRNA:   3'- guuCuGCGAGGa------GCUUGGCau-GUUGG- -5'
10785 3' -50.5 NC_002794.1 + 151967 0.66 0.997668
Target:  5'- cCGGG-UGCUCCUCGGcCCGggACGuggucuACCg -3'
miRNA:   3'- -GUUCuGCGAGGAGCUuGGCa-UGU------UGG- -5'
10785 3' -50.5 NC_002794.1 + 149959 0.7 0.971325
Target:  5'- uCGGGACGUggCCgaccugccgCGGACCG-GCGGCCg -3'
miRNA:   3'- -GUUCUGCGa-GGa--------GCUUGGCaUGUUGG- -5'
10785 3' -50.5 NC_002794.1 + 149674 0.66 0.997668
Target:  5'- gGGGGCGCgucgCgCUCGAcugGCCGcgGgGGCCg -3'
miRNA:   3'- gUUCUGCGa---G-GAGCU---UGGCa-UgUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.