miRNA display CGI


Results 1 - 20 of 383 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 135510 0.66 0.86144
Target:  5'- aUGCCCGcACaccgGACGcucGCG-CGCCGCuCGg -3'
miRNA:   3'- gACGGGCaUG----CUGC---UGCuGCGGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 92986 0.66 0.86144
Target:  5'- gCUGCCCGUcaGCGuguucuucaagcGCGACGugGUgcagCGgCGg -3'
miRNA:   3'- -GACGGGCA--UGC------------UGCUGCugCG----GCgGC- -5'
10785 5' -59.8 NC_002794.1 + 92688 0.66 0.86144
Target:  5'- -aGCUCcUACGugGugGACaacCCGCUGa -3'
miRNA:   3'- gaCGGGcAUGCugCugCUGc--GGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 92185 0.66 0.86144
Target:  5'- gCUuCCUGUGCGACGuCGACG-UGCuCGg -3'
miRNA:   3'- -GAcGGGCAUGCUGCuGCUGCgGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 118171 0.66 0.86144
Target:  5'- gUG-UCGUA-GGCGGCGACGC-GCCGa -3'
miRNA:   3'- gACgGGCAUgCUGCUGCUGCGgCGGC- -5'
10785 5' -59.8 NC_002794.1 + 16 0.66 0.86144
Target:  5'- -gGCCgCGaacACGAaaACGAgGCCGCCGc -3'
miRNA:   3'- gaCGG-GCa--UGCUgcUGCUgCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 84130 0.66 0.86144
Target:  5'- -cGCCCGaccgcACGcggacacgagcGCGACGGCGCCuCCu -3'
miRNA:   3'- gaCGGGCa----UGC-----------UGCUGCUGCGGcGGc -5'
10785 5' -59.8 NC_002794.1 + 149352 0.66 0.86144
Target:  5'- -gGUCgCGgggGCGugGACGGaGuCCGCCGa -3'
miRNA:   3'- gaCGG-GCa--UGCugCUGCUgC-GGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 84255 0.66 0.86144
Target:  5'- -cGCCCccgACGGCGcCGAUucccauuccgcaGCUGCCGa -3'
miRNA:   3'- gaCGGGca-UGCUGCuGCUG------------CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 95828 0.66 0.86144
Target:  5'- -gGCCgGgggaGCGGCGGCGGCG--GCCGg -3'
miRNA:   3'- gaCGGgCa---UGCUGCUGCUGCggCGGC- -5'
10785 5' -59.8 NC_002794.1 + 116912 0.66 0.86144
Target:  5'- -gGCCgGUcCGGCGucggcucCGGCGUCGUCGg -3'
miRNA:   3'- gaCGGgCAuGCUGCu------GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 129772 0.66 0.86144
Target:  5'- --aCCgGUGgaucCuGCGACGGCGUCGCCGg -3'
miRNA:   3'- gacGGgCAU----GcUGCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 181263 0.66 0.86144
Target:  5'- gUGCCCGcgaACGAagcCGAgGuACGCCGCg- -3'
miRNA:   3'- gACGGGCa--UGCU---GCUgC-UGCGGCGgc -5'
10785 5' -59.8 NC_002794.1 + 70218 0.66 0.86144
Target:  5'- -cGCCCGgACGgucggGCgGGCGGCcgGCCGCCc -3'
miRNA:   3'- gaCGGGCaUGC-----UG-CUGCUG--CGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 42177 0.66 0.86072
Target:  5'- -cGUCCGUcuccgccACGAuCGGcCGAaacuCGCCGCCGc -3'
miRNA:   3'- gaCGGGCA-------UGCU-GCU-GCU----GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 75047 0.66 0.86072
Target:  5'- -aGCCgGUucgauucGCGAcCGACGGCGUCGgCa -3'
miRNA:   3'- gaCGGgCA-------UGCU-GCUGCUGCGGCgGc -5'
10785 5' -59.8 NC_002794.1 + 46421 0.66 0.86072
Target:  5'- -cGCCCGaacgugaucuCGACGGaauucccCGACGCgGCCa -3'
miRNA:   3'- gaCGGGCau--------GCUGCU-------GCUGCGgCGGc -5'
10785 5' -59.8 NC_002794.1 + 123400 0.66 0.859276
Target:  5'- gCUGCUCcgcgucggcguggaGUACGacaGCGACGAggcggugacCGUCGCCGa -3'
miRNA:   3'- -GACGGG--------------CAUGC---UGCUGCU---------GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 21903 0.66 0.854899
Target:  5'- cCUGCgUCGgugguggcggcggagACGACGGCGGCGgCGCgGc -3'
miRNA:   3'- -GACG-GGCa--------------UGCUGCUGCUGCgGCGgC- -5'
10785 5' -59.8 NC_002794.1 + 29914 0.66 0.854164
Target:  5'- -gGaCCG-ACGACGggcaGCGACgaGCCGCCGu -3'
miRNA:   3'- gaCgGGCaUGCUGC----UGCUG--CGGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.