miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 83764 1.07 0.002871
Target:  5'- uCUGCCCGUACGACGACGACGCCGCCGc -3'
miRNA:   3'- -GACGGGCAUGCUGCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 135465 0.89 0.046515
Target:  5'- -gGCCCGcggcCGACGACGACGCCGCCGu -3'
miRNA:   3'- gaCGGGCau--GCUGCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 145799 0.84 0.104419
Target:  5'- -gGCUCGgACGACGACGcCGCCGCCGg -3'
miRNA:   3'- gaCGGGCaUGCUGCUGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 146974 0.81 0.170041
Target:  5'- -cGCCUGUcGCGAgGuCGGCGCCGCCGg -3'
miRNA:   3'- gaCGGGCA-UGCUgCuGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 81996 0.8 0.174143
Target:  5'- uUGCCCGU-CGACGACGcCGgCCGCUGa -3'
miRNA:   3'- gACGGGCAuGCUGCUGCuGC-GGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 180009 0.8 0.182612
Target:  5'- -gGCCCGgccACGACGACGGcCGCgGCCGu -3'
miRNA:   3'- gaCGGGCa--UGCUGCUGCU-GCGgCGGC- -5'
10785 5' -59.8 NC_002794.1 + 44705 0.8 0.190993
Target:  5'- -cGCCCGgccgcgaccGCGGCGACGucggccgGCGCCGCCGg -3'
miRNA:   3'- gaCGGGCa--------UGCUGCUGC-------UGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 17196 0.8 0.195998
Target:  5'- -gGUCUGUACGACGACacCGCCGCCGc -3'
miRNA:   3'- gaCGGGCAUGCUGCUGcuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 79455 0.79 0.200647
Target:  5'- -gGCgCGga-GACGACGACGCCGCCa -3'
miRNA:   3'- gaCGgGCaugCUGCUGCUGCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 60209 0.79 0.205392
Target:  5'- -cGaCCCcUACGACcGCGACGCCGCCGa -3'
miRNA:   3'- gaC-GGGcAUGCUGcUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 105461 0.79 0.215173
Target:  5'- uCUGCCCGUucuGgGACGACGA-GCCGUCGu -3'
miRNA:   3'- -GACGGGCA---UgCUGCUGCUgCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 46314 0.79 0.220212
Target:  5'- -aGCgCG-GCGGCGACGGCGCCGUCGc -3'
miRNA:   3'- gaCGgGCaUGCUGCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 68814 0.77 0.270196
Target:  5'- -cGaCUCGagACaGACGGCGACGCCGCCGg -3'
miRNA:   3'- gaC-GGGCa-UG-CUGCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 63683 0.77 0.272617
Target:  5'- -gGCCgCGgcgACGACGAugacgacgacggcgcCGGCGCCGCCGg -3'
miRNA:   3'- gaCGG-GCa--UGCUGCU---------------GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 82564 0.77 0.276282
Target:  5'- -gGCCCagcCGGCGAggcCGACGCCGCCGa -3'
miRNA:   3'- gaCGGGcauGCUGCU---GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 151577 0.77 0.282476
Target:  5'- -cGCCCcc-CGGCGGCGcGCGCCGCCGc -3'
miRNA:   3'- gaCGGGcauGCUGCUGC-UGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 128847 0.77 0.28878
Target:  5'- -aGCgCCG-GCGuCGACGACGCCGCUGc -3'
miRNA:   3'- gaCG-GGCaUGCuGCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 64791 0.77 0.28878
Target:  5'- -cGCCgGUuccGCGGCGAgCGACGCCGCgGa -3'
miRNA:   3'- gaCGGgCA---UGCUGCU-GCUGCGGCGgC- -5'
10785 5' -59.8 NC_002794.1 + 146999 0.77 0.295194
Target:  5'- -gGCCgaCGU-CGGCGGCGGCgGCCGCCGg -3'
miRNA:   3'- gaCGG--GCAuGCUGCUGCUG-CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 80203 0.76 0.301718
Target:  5'- -cGCCUGgGCGGuCGACGACGCCucGCCGc -3'
miRNA:   3'- gaCGGGCaUGCU-GCUGCUGCGG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.