miRNA display CGI


Results 21 - 40 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 80203 0.76 0.301718
Target:  5'- -cGCCUGgGCGGuCGACGACGCCucGCCGc -3'
miRNA:   3'- gaCGGGCaUGCU-GCUGCUGCGG--CGGC- -5'
10785 5' -59.8 NC_002794.1 + 19490 0.76 0.315098
Target:  5'- -cGCCCGcaccgACGACGGCGgaggucGCGCCGCuCGg -3'
miRNA:   3'- gaCGGGCa----UGCUGCUGC------UGCGGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 37725 0.76 0.315098
Target:  5'- -cGaCCC--GCGAgCGGCGGCGCCGCCGg -3'
miRNA:   3'- gaC-GGGcaUGCU-GCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 62490 0.76 0.315098
Target:  5'- -aGCgCGaguggACGGCgGGCGGCGCCGCCGg -3'
miRNA:   3'- gaCGgGCa----UGCUG-CUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 56580 0.76 0.321955
Target:  5'- -cGCCCGcGCcGCGGCGccCGCCGCCGg -3'
miRNA:   3'- gaCGGGCaUGcUGCUGCu-GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 107050 0.76 0.321955
Target:  5'- -cGCgUCGgagGCGGCGggcGCGGCGCCGCCGg -3'
miRNA:   3'- gaCG-GGCa--UGCUGC---UGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 61536 0.76 0.321955
Target:  5'- -cGgCCGccGCGAaGACGACGCCGCCGc -3'
miRNA:   3'- gaCgGGCa-UGCUgCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 127344 0.76 0.328922
Target:  5'- gCUGCCgagaCGcucGCGGCGGCGGCGCgGCCGc -3'
miRNA:   3'- -GACGG----GCa--UGCUGCUGCUGCGgCGGC- -5'
10785 5' -59.8 NC_002794.1 + 12166 0.76 0.336
Target:  5'- -cGCCCGgaucguCGcCGcCGACGCCGCCGc -3'
miRNA:   3'- gaCGGGCau----GCuGCuGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 103806 0.76 0.336
Target:  5'- gUGCgCC-UGCGACGGCGGCGCCGaCGu -3'
miRNA:   3'- gACG-GGcAUGCUGCUGCUGCGGCgGC- -5'
10785 5' -59.8 NC_002794.1 + 54987 0.75 0.342465
Target:  5'- -cGCCgCGgcgACGGCGGCGAcucgccgggcgucCGCCGCCGc -3'
miRNA:   3'- gaCGG-GCa--UGCUGCUGCU-------------GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 147735 0.75 0.343189
Target:  5'- -aGCCUGU-CGuuGACGugGCCGCUGg -3'
miRNA:   3'- gaCGGGCAuGCugCUGCugCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 62050 0.75 0.343189
Target:  5'- cCUGUCgGUGgccgacgcCGGCGGCGACGCCGgCGg -3'
miRNA:   3'- -GACGGgCAU--------GCUGCUGCUGCGGCgGC- -5'
10785 5' -59.8 NC_002794.1 + 32272 0.75 0.350488
Target:  5'- -gGCCgGccgauCGGCGAgCGACGCCGCCGc -3'
miRNA:   3'- gaCGGgCau---GCUGCU-GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 42648 0.75 0.350488
Target:  5'- -aGUCgCGgcCGAagcCGACGGCGCCGCCGg -3'
miRNA:   3'- gaCGG-GCauGCU---GCUGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 181759 0.75 0.357896
Target:  5'- -aGCCCGcugACGcCGAUGGCGCCGCg- -3'
miRNA:   3'- gaCGGGCa--UGCuGCUGCUGCGGCGgc -5'
10785 5' -59.8 NC_002794.1 + 66828 0.75 0.357896
Target:  5'- -cGCCCG-GCG-CGACuccgGGCGCCGCCGu -3'
miRNA:   3'- gaCGGGCaUGCuGCUG----CUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 124382 0.75 0.357896
Target:  5'- -cGCCuCGgucGCGGCGGCG-CGUCGCCGg -3'
miRNA:   3'- gaCGG-GCa--UGCUGCUGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 193793 0.75 0.357896
Target:  5'- -cGCCCG-ACGACGcCGGCGCCcgcucgucuggcGCCGa -3'
miRNA:   3'- gaCGGGCaUGCUGCuGCUGCGG------------CGGC- -5'
10785 5' -59.8 NC_002794.1 + 36623 0.75 0.365414
Target:  5'- cCUGCUCG-ACGACGA--ACGCCGUCGg -3'
miRNA:   3'- -GACGGGCaUGCUGCUgcUGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.