miRNA display CGI


Results 21 - 40 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 12959 0.66 0.854164
Target:  5'- uUGgCCGUGuCGGUGACGugGCCuucuuccuccugGCCGu -3'
miRNA:   3'- gACgGGCAU-GCUGCUGCugCGG------------CGGC- -5'
10785 5' -59.8 NC_002794.1 + 89914 0.66 0.854164
Target:  5'- -gGCCCGUugG-CGcuagaGGCGCgggCGCCGg -3'
miRNA:   3'- gaCGGGCAugCuGCug---CUGCG---GCGGC- -5'
10785 5' -59.8 NC_002794.1 + 125402 0.66 0.854164
Target:  5'- -aGCCCGU-CGA----GGCGCCGCCc -3'
miRNA:   3'- gaCGGGCAuGCUgcugCUGCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 30396 0.66 0.854164
Target:  5'- -cGCCC--GCGACG-UGAUGCCGUgGu -3'
miRNA:   3'- gaCGGGcaUGCUGCuGCUGCGGCGgC- -5'
10785 5' -59.8 NC_002794.1 + 29914 0.66 0.854164
Target:  5'- -gGaCCG-ACGACGggcaGCGACgaGCCGCCGu -3'
miRNA:   3'- gaCgGGCaUGCUGC----UGCUG--CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 141940 0.66 0.854164
Target:  5'- --aUCCG-ACGGCGGCGAC-CCGuuGg -3'
miRNA:   3'- gacGGGCaUGCUGCUGCUGcGGCggC- -5'
10785 5' -59.8 NC_002794.1 + 148103 0.66 0.853426
Target:  5'- gCUGCCgCucaagaaGCGACGgucggugucgggcGCGGgGCCGCCGg -3'
miRNA:   3'- -GACGG-Gca-----UGCUGC-------------UGCUgCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 113584 0.66 0.853426
Target:  5'- -cGuCCUGcACGACGGCGcggaguuucuccaGCGCCGCgGc -3'
miRNA:   3'- gaC-GGGCaUGCUGCUGC-------------UGCGGCGgC- -5'
10785 5' -59.8 NC_002794.1 + 142477 0.66 0.846708
Target:  5'- -gGCaCCGUG-GACGcguGCGGCGCCGgCa -3'
miRNA:   3'- gaCG-GGCAUgCUGC---UGCUGCGGCgGc -5'
10785 5' -59.8 NC_002794.1 + 144069 0.66 0.846708
Target:  5'- -cGCCCGacGCGucCGACGAgGUgGCCu -3'
miRNA:   3'- gaCGGGCa-UGCu-GCUGCUgCGgCGGc -5'
10785 5' -59.8 NC_002794.1 + 86834 0.66 0.846708
Target:  5'- -cGCCgGgauCGGguCGGCGGCcCCGCCGg -3'
miRNA:   3'- gaCGGgCau-GCU--GCUGCUGcGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 84421 0.66 0.846708
Target:  5'- -cGCCaucuccauCGACGGCGACG-UGCCGa -3'
miRNA:   3'- gaCGGgcau----GCUGCUGCUGCgGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 92542 0.66 0.846708
Target:  5'- -aGUCCaaccGCGACGAgGugGCCGgCGc -3'
miRNA:   3'- gaCGGGca--UGCUGCUgCugCGGCgGC- -5'
10785 5' -59.8 NC_002794.1 + 134459 0.66 0.846708
Target:  5'- gUGCCCcuucGgGACGGCGcucuCGUCGCCa -3'
miRNA:   3'- gACGGGca--UgCUGCUGCu---GCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 101462 0.66 0.846708
Target:  5'- -cGCCCGaaACGcCGGCG-CGCCcGCCc -3'
miRNA:   3'- gaCGGGCa-UGCuGCUGCuGCGG-CGGc -5'
10785 5' -59.8 NC_002794.1 + 49441 0.66 0.846708
Target:  5'- -cGUCCGgcGCGGuCGucgccgUGGCGCCGCCGu -3'
miRNA:   3'- gaCGGGCa-UGCU-GCu-----GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 869 0.66 0.846708
Target:  5'- -cGCCCGcgagGCGGuCGGCGuGCGCgcggGCCGg -3'
miRNA:   3'- gaCGGGCa---UGCU-GCUGC-UGCGg---CGGC- -5'
10785 5' -59.8 NC_002794.1 + 192221 0.66 0.846708
Target:  5'- -aGCgCG-ACGAagaaGAuCGGCGCUGCCGu -3'
miRNA:   3'- gaCGgGCaUGCUg---CU-GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 131055 0.66 0.846708
Target:  5'- aUGUUCGU-CGACGACGAgaCGuuguuCCGCCa -3'
miRNA:   3'- gACGGGCAuGCUGCUGCU--GC-----GGCGGc -5'
10785 5' -59.8 NC_002794.1 + 52894 0.66 0.846708
Target:  5'- -gGgUCGaACG-CGGCGcCGCCGCCGu -3'
miRNA:   3'- gaCgGGCaUGCuGCUGCuGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.