miRNA display CGI


Results 41 - 60 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 181533 0.66 0.845953
Target:  5'- -cGCCCGccgcCGGCGGgcCGGCGCucucgguCGCCGg -3'
miRNA:   3'- gaCGGGCau--GCUGCU--GCUGCG-------GCGGC- -5'
10785 5' -59.8 NC_002794.1 + 33761 0.66 0.845953
Target:  5'- --aCCUGUACGGCGAgcugcugaagcaCGACagccuguGCCGCCa -3'
miRNA:   3'- gacGGGCAUGCUGCU------------GCUG-------CGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 49359 0.66 0.842152
Target:  5'- uUGCgaucgCCGU-CGAUGugGAagaagcgcgccaggcCGCCGCCGu -3'
miRNA:   3'- gACG-----GGCAuGCUGCugCU---------------GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 91251 0.66 0.83908
Target:  5'- gCUGCgcucgcggacgCCGUuCGugGAcCGGCGCgGCCu -3'
miRNA:   3'- -GACG-----------GGCAuGCugCU-GCUGCGgCGGc -5'
10785 5' -59.8 NC_002794.1 + 58047 0.66 0.83908
Target:  5'- -cGCCCGUcccCGuCGGCGGCcCCGgCGg -3'
miRNA:   3'- gaCGGGCAu--GCuGCUGCUGcGGCgGC- -5'
10785 5' -59.8 NC_002794.1 + 34046 0.66 0.83908
Target:  5'- gCUGCCgGgcCGgcccGCGcACGAC-CCGCCGu -3'
miRNA:   3'- -GACGGgCauGC----UGC-UGCUGcGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 112320 0.66 0.83908
Target:  5'- -gGCgCCG-ACGGCGGgGagcGCGCCgGCCGg -3'
miRNA:   3'- gaCG-GGCaUGCUGCUgC---UGCGG-CGGC- -5'
10785 5' -59.8 NC_002794.1 + 190988 0.66 0.83908
Target:  5'- -gGCa-GcGCGGCGACGGCGUCGCg- -3'
miRNA:   3'- gaCGggCaUGCUGCUGCUGCGGCGgc -5'
10785 5' -59.8 NC_002794.1 + 113928 0.66 0.83908
Target:  5'- -cGgCCGccgaGGCGACGGgcCGCUGCCGg -3'
miRNA:   3'- gaCgGGCaug-CUGCUGCU--GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 192309 0.66 0.83908
Target:  5'- -cGCUCGUccGCGcuCGcCGcCGCCGCCGc -3'
miRNA:   3'- gaCGGGCA--UGCu-GCuGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 85285 0.66 0.83908
Target:  5'- -gGCuCCGgucaGCGgcugagacgagGCGACGAC-CCGCCGa -3'
miRNA:   3'- gaCG-GGCa---UGC-----------UGCUGCUGcGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 73293 0.66 0.836759
Target:  5'- -cGCCCgGUcucggaaccgaaccGCGACGGCGACGCguaccugcuCGUCa -3'
miRNA:   3'- gaCGGG-CA--------------UGCUGCUGCUGCG---------GCGGc -5'
10785 5' -59.8 NC_002794.1 + 25916 0.66 0.836759
Target:  5'- uCUG-UCGUcucucgacgaaaccACGACGACGACGuCCGUCc -3'
miRNA:   3'- -GACgGGCA--------------UGCUGCUGCUGC-GGCGGc -5'
10785 5' -59.8 NC_002794.1 + 114705 0.66 0.831285
Target:  5'- cCUGCgagaCGgacgGCGGCGGCGGCGgCuCCGg -3'
miRNA:   3'- -GACGg---GCa---UGCUGCUGCUGCgGcGGC- -5'
10785 5' -59.8 NC_002794.1 + 123056 0.66 0.831285
Target:  5'- -gGCCCGcUGCuGGgGACGAUGCagaacguGCCGa -3'
miRNA:   3'- gaCGGGC-AUG-CUgCUGCUGCGg------CGGC- -5'
10785 5' -59.8 NC_002794.1 + 148569 0.66 0.831285
Target:  5'- uCUGCUCGgacugaucUGCGAgcACGGCcgGCCGCCGu -3'
miRNA:   3'- -GACGGGC--------AUGCUgcUGCUG--CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 153085 0.66 0.831285
Target:  5'- -aGCUCGccaGACuGACG-CGCCGCCu -3'
miRNA:   3'- gaCGGGCaugCUG-CUGCuGCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 151922 0.66 0.831285
Target:  5'- -aGCuCCGUcuGCGGCGcaaGCGcucCGCCGCCc -3'
miRNA:   3'- gaCG-GGCA--UGCUGC---UGCu--GCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 69264 0.66 0.831285
Target:  5'- -cGCuCCGUACGuuccCGGucCGCCGCCGa -3'
miRNA:   3'- gaCG-GGCAUGCugcuGCU--GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 108573 0.66 0.831285
Target:  5'- aCUGCaaaaccaaGUGCGaACGcuaucGCGGCGCgGCCGa -3'
miRNA:   3'- -GACGgg------CAUGC-UGC-----UGCUGCGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.