miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 16 0.66 0.86144
Target:  5'- -gGCCgCGaacACGAaaACGAgGCCGCCGc -3'
miRNA:   3'- gaCGG-GCa--UGCUgcUGCUgCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 345 0.69 0.667466
Target:  5'- -aGCCCGcGCGACGGCaGAUuuucacggcaaacgGCCGCgCGa -3'
miRNA:   3'- gaCGGGCaUGCUGCUG-CUG--------------CGGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 869 0.66 0.846708
Target:  5'- -cGCCCGcgagGCGGuCGGCGuGCGCgcggGCCGg -3'
miRNA:   3'- gaCGGGCa---UGCU-GCUGC-UGCGg---CGGC- -5'
10785 5' -59.8 NC_002794.1 + 10755 0.68 0.745608
Target:  5'- gUGCCaacgagACGACGGCGGCGUggagcugcagugCGCCa -3'
miRNA:   3'- gACGGgca---UGCUGCUGCUGCG------------GCGGc -5'
10785 5' -59.8 NC_002794.1 + 11249 0.66 0.823328
Target:  5'- gCUGCaCGUACGAggggucgGGCGACGCgGUCa -3'
miRNA:   3'- -GACGgGCAUGCUg------CUGCUGCGgCGGc -5'
10785 5' -59.8 NC_002794.1 + 11653 0.68 0.717836
Target:  5'- -cGgCCG-ACGACG-CGGC-CCGCCGg -3'
miRNA:   3'- gaCgGGCaUGCUGCuGCUGcGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 11797 0.7 0.622159
Target:  5'- gUGUCCGU--GGCGcCGcCGCCGCCGu -3'
miRNA:   3'- gACGGGCAugCUGCuGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 12001 0.66 0.823328
Target:  5'- gCUGCUgUGUG-GACuGAUGuGCGCCGCCGg -3'
miRNA:   3'- -GACGG-GCAUgCUG-CUGC-UGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 12051 0.69 0.708438
Target:  5'- cCUGCCgGUAUcucugGGCcGCGCCGCCGa -3'
miRNA:   3'- -GACGGgCAUGcug--CUGcUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 12166 0.76 0.336
Target:  5'- -cGCCCGgaucguCGcCGcCGACGCCGCCGc -3'
miRNA:   3'- gaCGGGCau----GCuGCuGCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 12215 0.75 0.373039
Target:  5'- gUGCCgGcgGCGuCGGCGGCGCCGgCGg -3'
miRNA:   3'- gACGGgCa-UGCuGCUGCUGCGGCgGC- -5'
10785 5' -59.8 NC_002794.1 + 12395 0.73 0.481406
Target:  5'- -cGCCUGgcCGACaaccgcacgcgGACGGCGCgCGCCGa -3'
miRNA:   3'- gaCGGGCauGCUG-----------CUGCUGCG-GCGGC- -5'
10785 5' -59.8 NC_002794.1 + 12717 0.67 0.781364
Target:  5'- gCUGCgCGUuccGCGGCGACGAgGgC-CCGg -3'
miRNA:   3'- -GACGgGCA---UGCUGCUGCUgCgGcGGC- -5'
10785 5' -59.8 NC_002794.1 + 12959 0.66 0.854164
Target:  5'- uUGgCCGUGuCGGUGACGugGCCuucuuccuccugGCCGu -3'
miRNA:   3'- gACgGGCAU-GCUGCUGCugCGG------------CGGC- -5'
10785 5' -59.8 NC_002794.1 + 13315 0.66 0.831285
Target:  5'- -cGCCCG-GCGAgCGACGAcCGCUcccCCGg -3'
miRNA:   3'- gaCGGGCaUGCU-GCUGCU-GCGGc--GGC- -5'
10785 5' -59.8 NC_002794.1 + 13813 0.73 0.437805
Target:  5'- -gGCCCGgcCGGCGGCGACgGCCuCCu -3'
miRNA:   3'- gaCGGGCauGCUGCUGCUG-CGGcGGc -5'
10785 5' -59.8 NC_002794.1 + 14504 0.69 0.679929
Target:  5'- -gGCCCGcgcucGCGGCGcucgUGGCGCCGCuCGg -3'
miRNA:   3'- gaCGGGCa----UGCUGCu---GCUGCGGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 14670 0.67 0.806958
Target:  5'- -gGUCCGacucGCGGCGGCGgucGCGCUGCUc -3'
miRNA:   3'- gaCGGGCa---UGCUGCUGC---UGCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 15206 0.69 0.660736
Target:  5'- -cGCCCGcgAUGGCGGCGucccccguccgcGgGCUGCCGg -3'
miRNA:   3'- gaCGGGCa-UGCUGCUGC------------UgCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 16336 0.7 0.612515
Target:  5'- cCUGgCCGgcacCGACGACGuCGgCGCCa -3'
miRNA:   3'- -GACgGGCau--GCUGCUGCuGCgGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.