miRNA display CGI


Results 21 - 40 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 16793 0.67 0.790024
Target:  5'- -cGCCaaauCGcCGACGACGCCcaGCCGc -3'
miRNA:   3'- gaCGGgcauGCuGCUGCUGCGG--CGGC- -5'
10785 5' -59.8 NC_002794.1 + 17196 0.8 0.195998
Target:  5'- -gGUCUGUACGACGACacCGCCGCCGc -3'
miRNA:   3'- gaCGGGCAUGCUGCUGcuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 17486 0.71 0.545707
Target:  5'- -cGCCgCGUuuGCGAuCGcCGACGCCgGCCGa -3'
miRNA:   3'- gaCGG-GCA--UGCU-GCuGCUGCGG-CGGC- -5'
10785 5' -59.8 NC_002794.1 + 17624 0.7 0.651105
Target:  5'- --cCCCGccGCGGCGAgCGAuccCGCCGCCGc -3'
miRNA:   3'- gacGGGCa-UGCUGCU-GCU---GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 19445 0.69 0.669387
Target:  5'- -gGCCCcgagcgggcacgaGcgGCGGCGGCGGCGggacCCGCCGg -3'
miRNA:   3'- gaCGGG-------------Ca-UGCUGCUGCUGC----GGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 19490 0.76 0.315098
Target:  5'- -cGCCCGcaccgACGACGGCGgaggucGCGCCGCuCGg -3'
miRNA:   3'- gaCGGGCa----UGCUGCUGC------UGCGGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 19529 0.7 0.622159
Target:  5'- -cGCCgGcGCGGCG-CGGC-CCGCCGg -3'
miRNA:   3'- gaCGGgCaUGCUGCuGCUGcGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 21425 0.67 0.798558
Target:  5'- -aGCCCGUccuccgauaACGuCGGucucgcgucgcuCGGCGUCGCCGu -3'
miRNA:   3'- gaCGGGCA---------UGCuGCU------------GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 21603 0.68 0.736429
Target:  5'- gUGCCCGUGacccACcGCGcCGUCGCCGg -3'
miRNA:   3'- gACGGGCAUgc--UGcUGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 21903 0.66 0.854899
Target:  5'- cCUGCgUCGgugguggcggcggagACGACGGCGGCGgCGCgGc -3'
miRNA:   3'- -GACG-GGCa--------------UGCUGCUGCUGCgGCGgC- -5'
10785 5' -59.8 NC_002794.1 + 22896 0.75 0.380773
Target:  5'- cCU-CCCGUugGugGACGGCggcgaccgcgGCCGCCa -3'
miRNA:   3'- -GAcGGGCAugCugCUGCUG----------CGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 23234 0.69 0.708438
Target:  5'- -aGCCCGggGCGuugcCGuGCGAgccucCGCCGCCGg -3'
miRNA:   3'- gaCGGGCa-UGCu---GC-UGCU-----GCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 24074 0.67 0.781364
Target:  5'- --aCCCGUGCGcccgGGCgGGCGUCGCCGu -3'
miRNA:   3'- gacGGGCAUGCug--CUG-CUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 25916 0.66 0.836759
Target:  5'- uCUG-UCGUcucucgacgaaaccACGACGACGACGuCCGUCc -3'
miRNA:   3'- -GACgGGCA--------------UGCUGCUGCUGC-GGCGGc -5'
10785 5' -59.8 NC_002794.1 + 29204 0.73 0.463703
Target:  5'- -cGUCCGUccgGCGGuCGGCGGCcgucgGCCGCCGa -3'
miRNA:   3'- gaCGGGCA---UGCU-GCUGCUG-----CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 29914 0.66 0.854164
Target:  5'- -gGaCCG-ACGACGggcaGCGACgaGCCGCCGu -3'
miRNA:   3'- gaCgGGCaUGCUGC----UGCUG--CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 30079 0.72 0.51775
Target:  5'- -cGCCCGguCGACGAgGcGCGCgGCCGg -3'
miRNA:   3'- gaCGGGCauGCUGCUgC-UGCGgCGGC- -5'
10785 5' -59.8 NC_002794.1 + 30396 0.66 0.854164
Target:  5'- -cGCCC--GCGACG-UGAUGCCGUgGu -3'
miRNA:   3'- gaCGGGcaUGCUGCuGCUGCGGCGgC- -5'
10785 5' -59.8 NC_002794.1 + 30982 0.69 0.678972
Target:  5'- cCUcCCCG-GCGACGGCggggucuucgccgGACGUCGCCGc -3'
miRNA:   3'- -GAcGGGCaUGCUGCUG-------------CUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 31381 0.69 0.698982
Target:  5'- cCUcCCCGU-CGuCGGCGGCcCCGCCGc -3'
miRNA:   3'- -GAcGGGCAuGCuGCUGCUGcGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.