miRNA display CGI


Results 1 - 20 of 383 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10785 5' -59.8 NC_002794.1 + 195624 0.69 0.660736
Target:  5'- -gGCCCaaacggccgGCGACGACGA-GCCGCaCGc -3'
miRNA:   3'- gaCGGGca-------UGCUGCUGCUgCGGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 195090 0.67 0.790024
Target:  5'- gUGCCCcagcagcagaaaGUACGGCGucucgugcgcccGCGGCGCgCGCgGg -3'
miRNA:   3'- gACGGG------------CAUGCUGC------------UGCUGCG-GCGgC- -5'
10785 5' -59.8 NC_002794.1 + 194938 0.68 0.745608
Target:  5'- -aGCUC---CGACGGCGACGUCGUCa -3'
miRNA:   3'- gaCGGGcauGCUGCUGCUGCGGCGGc -5'
10785 5' -59.8 NC_002794.1 + 194505 0.7 0.622159
Target:  5'- -cGCCCGgcccGCGGCccGCG-UGCCGCCGg -3'
miRNA:   3'- gaCGGGCa---UGCUGc-UGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 194265 0.67 0.772584
Target:  5'- -cGCCCG-ACGccgccuCGcACGGCGCgCGCCa -3'
miRNA:   3'- gaCGGGCaUGCu-----GC-UGCUGCG-GCGGc -5'
10785 5' -59.8 NC_002794.1 + 194040 0.68 0.763694
Target:  5'- -cGCCCGccgcCGcCGcCGcCGCCGCCGa -3'
miRNA:   3'- gaCGGGCau--GCuGCuGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 193793 0.75 0.357896
Target:  5'- -cGCCCG-ACGACGcCGGCGCCcgcucgucuggcGCCGa -3'
miRNA:   3'- gaCGGGCaUGCUGCuGCUGCGG------------CGGC- -5'
10785 5' -59.8 NC_002794.1 + 193741 0.71 0.574132
Target:  5'- -cGCCCGcgGCuuCGGCGAgCGaCCGCCGg -3'
miRNA:   3'- gaCGGGCa-UGcuGCUGCU-GC-GGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 192552 0.67 0.806958
Target:  5'- gUGCCCGU-CGuaGCGGCaGGCGCaCGCg- -3'
miRNA:   3'- gACGGGCAuGC--UGCUG-CUGCG-GCGgc -5'
10785 5' -59.8 NC_002794.1 + 192309 0.66 0.83908
Target:  5'- -cGCUCGUccGCGcuCGcCGcCGCCGCCGc -3'
miRNA:   3'- gaCGGGCA--UGCu-GCuGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 192221 0.66 0.846708
Target:  5'- -aGCgCG-ACGAagaaGAuCGGCGCUGCCGu -3'
miRNA:   3'- gaCGgGCaUGCUg---CU-GCUGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 192029 0.69 0.689477
Target:  5'- gCUGUuuCUGUgGCGGCGGCGGCuGCUGCUGc -3'
miRNA:   3'- -GACG--GGCA-UGCUGCUGCUG-CGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 191656 0.68 0.736429
Target:  5'- -aGCCCGccgGGgGACGGCGCCGgCa -3'
miRNA:   3'- gaCGGGCaugCUgCUGCUGCGGCgGc -5'
10785 5' -59.8 NC_002794.1 + 190988 0.66 0.83908
Target:  5'- -gGCa-GcGCGGCGACGGCGUCGCg- -3'
miRNA:   3'- gaCGggCaUGCUGCUGCUGCGGCGgc -5'
10785 5' -59.8 NC_002794.1 + 190740 0.67 0.806958
Target:  5'- -cGCCCGccgccgucucgACGGgGGCGGCGgCCGCgCGu -3'
miRNA:   3'- gaCGGGCa----------UGCUgCUGCUGC-GGCG-GC- -5'
10785 5' -59.8 NC_002794.1 + 189856 0.69 0.660736
Target:  5'- -cGCggagCCGU-CGGCGuCGuCGCCGCCGa -3'
miRNA:   3'- gaCG----GGCAuGCUGCuGCuGCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 189060 0.72 0.527009
Target:  5'- -cGUCgCGUACGGCGucuCGG-GCCGCCGg -3'
miRNA:   3'- gaCGG-GCAUGCUGCu--GCUgCGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 188776 0.67 0.806958
Target:  5'- -aGCCCGgugcaGCGguaGCGGcCGGCcCCGCCGa -3'
miRNA:   3'- gaCGGGCa----UGC---UGCU-GCUGcGGCGGC- -5'
10785 5' -59.8 NC_002794.1 + 188357 0.68 0.763694
Target:  5'- -cGCCCGUcCGGcCGGCGGCG--GCCGa -3'
miRNA:   3'- gaCGGGCAuGCU-GCUGCUGCggCGGC- -5'
10785 5' -59.8 NC_002794.1 + 188312 0.69 0.689477
Target:  5'- -gGCCCGUcguCGuCGuccuCGuCGCCGCCGc -3'
miRNA:   3'- gaCGGGCAu--GCuGCu---GCuGCGGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.