Results 1 - 20 of 383 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10785 | 5' | -59.8 | NC_002794.1 | + | 83764 | 1.07 | 0.002871 |
Target: 5'- uCUGCCCGUACGACGACGACGCCGCCGc -3' miRNA: 3'- -GACGGGCAUGCUGCUGCUGCGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 92688 | 0.66 | 0.86144 |
Target: 5'- -aGCUCcUACGugGugGACaacCCGCUGa -3' miRNA: 3'- gaCGGGcAUGCugCugCUGc--GGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 92986 | 0.66 | 0.86144 |
Target: 5'- gCUGCCCGUcaGCGuguucuucaagcGCGACGugGUgcagCGgCGg -3' miRNA: 3'- -GACGGGCA--UGC------------UGCUGCugCG----GCgGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 46421 | 0.66 | 0.86072 |
Target: 5'- -cGCCCGaacgugaucuCGACGGaauucccCGACGCgGCCa -3' miRNA: 3'- gaCGGGCau--------GCUGCU-------GCUGCGgCGGc -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 75047 | 0.66 | 0.86072 |
Target: 5'- -aGCCgGUucgauucGCGAcCGACGGCGUCGgCa -3' miRNA: 3'- gaCGGgCA-------UGCU-GCUGCUGCGGCgGc -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 42177 | 0.66 | 0.86072 |
Target: 5'- -cGUCCGUcuccgccACGAuCGGcCGAaacuCGCCGCCGc -3' miRNA: 3'- gaCGGGCA-------UGCU-GCU-GCU----GCGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 123400 | 0.66 | 0.859276 |
Target: 5'- gCUGCUCcgcgucggcguggaGUACGacaGCGACGAggcggugacCGUCGCCGa -3' miRNA: 3'- -GACGGG--------------CAUGC---UGCUGCU---------GCGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 21903 | 0.66 | 0.854899 |
Target: 5'- cCUGCgUCGgugguggcggcggagACGACGGCGGCGgCGCgGc -3' miRNA: 3'- -GACG-GGCa--------------UGCUGCUGCUGCgGCGgC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 141940 | 0.66 | 0.854164 |
Target: 5'- --aUCCG-ACGGCGGCGAC-CCGuuGg -3' miRNA: 3'- gacGGGCaUGCUGCUGCUGcGGCggC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 92185 | 0.66 | 0.86144 |
Target: 5'- gCUuCCUGUGCGACGuCGACG-UGCuCGg -3' miRNA: 3'- -GAcGGGCAUGCUGCuGCUGCgGCG-GC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 118171 | 0.66 | 0.86144 |
Target: 5'- gUG-UCGUA-GGCGGCGACGC-GCCGa -3' miRNA: 3'- gACgGGCAUgCUGCUGCUGCGgCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 16 | 0.66 | 0.86144 |
Target: 5'- -gGCCgCGaacACGAaaACGAgGCCGCCGc -3' miRNA: 3'- gaCGG-GCa--UGCUgcUGCUgCGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 70218 | 0.66 | 0.86144 |
Target: 5'- -cGCCCGgACGgucggGCgGGCGGCcgGCCGCCc -3' miRNA: 3'- gaCGGGCaUGC-----UG-CUGCUG--CGGCGGc -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 181263 | 0.66 | 0.86144 |
Target: 5'- gUGCCCGcgaACGAagcCGAgGuACGCCGCg- -3' miRNA: 3'- gACGGGCa--UGCU---GCUgC-UGCGGCGgc -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 129772 | 0.66 | 0.86144 |
Target: 5'- --aCCgGUGgaucCuGCGACGGCGUCGCCGg -3' miRNA: 3'- gacGGgCAU----GcUGCUGCUGCGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 116912 | 0.66 | 0.86144 |
Target: 5'- -gGCCgGUcCGGCGucggcucCGGCGUCGUCGg -3' miRNA: 3'- gaCGGgCAuGCUGCu------GCUGCGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 95828 | 0.66 | 0.86144 |
Target: 5'- -gGCCgGgggaGCGGCGGCGGCG--GCCGg -3' miRNA: 3'- gaCGGgCa---UGCUGCUGCUGCggCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 84255 | 0.66 | 0.86144 |
Target: 5'- -cGCCCccgACGGCGcCGAUucccauuccgcaGCUGCCGa -3' miRNA: 3'- gaCGGGca-UGCUGCuGCUG------------CGGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 149352 | 0.66 | 0.86144 |
Target: 5'- -gGUCgCGgggGCGugGACGGaGuCCGCCGa -3' miRNA: 3'- gaCGG-GCa--UGCugCUGCUgC-GGCGGC- -5' |
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10785 | 5' | -59.8 | NC_002794.1 | + | 84130 | 0.66 | 0.86144 |
Target: 5'- -cGCCCGaccgcACGcggacacgagcGCGACGGCGCCuCCu -3' miRNA: 3'- gaCGGGCa----UGC-----------UGCUGCUGCGGcGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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