miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 73271 0.66 0.785367
Target:  5'- aCCucCGCCgACCGCgGCGacGCGCccGGUCu -3'
miRNA:   3'- -GGu-GCGGaUGGCGaCGC--CGCG--CCAGu -5'
10786 3' -61.2 NC_002794.1 + 191535 0.66 0.785367
Target:  5'- cCCGCGCCUcCCGCcGCaGuCG-GGUCc -3'
miRNA:   3'- -GGUGCGGAuGGCGaCGcC-GCgCCAGu -5'
10786 3' -61.2 NC_002794.1 + 38622 0.66 0.785367
Target:  5'- gCGCGUCccgacucGCCGgUGCGGCGCGa--- -3'
miRNA:   3'- gGUGCGGa------UGGCgACGCCGCGCcagu -5'
10786 3' -61.2 NC_002794.1 + 6931 0.66 0.785367
Target:  5'- gCCGCaGCC-GCCGC-GCGGCacccucuCGGUCu -3'
miRNA:   3'- -GGUG-CGGaUGGCGaCGCCGc------GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 63914 0.66 0.785367
Target:  5'- cUCGCGCCgcgACCGCcGCccGGCcgGCGaGUCu -3'
miRNA:   3'- -GGUGCGGa--UGGCGaCG--CCG--CGC-CAGu -5'
10786 3' -61.2 NC_002794.1 + 181867 0.66 0.776623
Target:  5'- aUCACGCU--CCGCUGCccCGgGGUCGc -3'
miRNA:   3'- -GGUGCGGauGGCGACGccGCgCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 6118 0.66 0.776623
Target:  5'- uCCGaGCCUACCuGUUGCGGUcgaucgggggGCGGa-- -3'
miRNA:   3'- -GGUgCGGAUGG-CGACGCCG----------CGCCagu -5'
10786 3' -61.2 NC_002794.1 + 12396 0.66 0.776623
Target:  5'- gCCugGCCgacaACCGCacgcgGaCGGCGCGcGcCGa -3'
miRNA:   3'- -GGugCGGa---UGGCGa----C-GCCGCGC-CaGU- -5'
10786 3' -61.2 NC_002794.1 + 58316 0.66 0.776623
Target:  5'- gCCGCGCuCUGCaCGCcGCGcGUGCucGUCGg -3'
miRNA:   3'- -GGUGCG-GAUG-GCGaCGC-CGCGc-CAGU- -5'
10786 3' -61.2 NC_002794.1 + 105702 0.66 0.776623
Target:  5'- gCCGuCGCCU-CCGCUcgaggcgaucGCGGCgGCcGUCGg -3'
miRNA:   3'- -GGU-GCGGAuGGCGA----------CGCCG-CGcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 107793 0.66 0.776623
Target:  5'- aCCGCGUCcGCgCGCauUGCGaacgccuCGCGGUCAc -3'
miRNA:   3'- -GGUGCGGaUG-GCG--ACGCc------GCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 71775 0.66 0.776623
Target:  5'- nCCGCGCCgu-CGC-GCGGCGa-GUCGc -3'
miRNA:   3'- -GGUGCGGaugGCGaCGCCGCgcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 122639 0.66 0.771321
Target:  5'- gCACGCgguggacgugauCUACCuGCUgGCGGCGCaggcccggcugugccGGUCGc -3'
miRNA:   3'- gGUGCG------------GAUGG-CGA-CGCCGCG---------------CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 121957 0.66 0.767764
Target:  5'- -aGCGCCUGgaGCgcuccgUGCGGCuCGGUCc -3'
miRNA:   3'- ggUGCGGAUggCG------ACGCCGcGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 66845 0.66 0.767764
Target:  5'- -gGCGCC-GCCGU--CGGCGCGG-CGa -3'
miRNA:   3'- ggUGCGGaUGGCGacGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 75364 0.66 0.767764
Target:  5'- gCCAcCGaCCcGCCGCggccgGCGGCgGCGGcCu -3'
miRNA:   3'- -GGU-GC-GGaUGGCGa----CGCCG-CGCCaGu -5'
10786 3' -61.2 NC_002794.1 + 143278 0.66 0.762397
Target:  5'- cCgGCGCCgGCCGCucggggucgggcgggUGCaGCGCGG-CGg -3'
miRNA:   3'- -GgUGCGGaUGGCG---------------ACGcCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 143575 0.66 0.758798
Target:  5'- gCGCGCCguCCuCgGCGGCGCuguGGUCGa -3'
miRNA:   3'- gGUGCGGauGGcGaCGCCGCG---CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 137602 0.66 0.758798
Target:  5'- gCCGcCGCCgGCgGUcGCGGCGgCGGUg- -3'
miRNA:   3'- -GGU-GCGGaUGgCGaCGCCGC-GCCAgu -5'
10786 3' -61.2 NC_002794.1 + 116126 0.66 0.758798
Target:  5'- gUC-CGCCgcgGCgGCgGCGGCGgCGGcCAg -3'
miRNA:   3'- -GGuGCGGa--UGgCGaCGCCGC-GCCaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.