miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 83635 1.09 0.001449
Target:  5'- uCCACGCCUACCGCUGCGGCGCGGUCAc -3'
miRNA:   3'- -GGUGCGGAUGGCGACGCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 49012 0.81 0.124631
Target:  5'- cCCGCGCCgcggcgGCCGCgGCgucguccGGCGCGGUCGu -3'
miRNA:   3'- -GGUGCGGa-----UGGCGaCG-------CCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 185162 0.79 0.151851
Target:  5'- aCGCGuCCU-CCGCcggcGCGGCGCGGUCGg -3'
miRNA:   3'- gGUGC-GGAuGGCGa---CGCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 132892 0.78 0.192832
Target:  5'- cCCGCGCCgcCCGgacCUGCGGCGgcCGGUCAc -3'
miRNA:   3'- -GGUGCGGauGGC---GACGCCGC--GCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 110626 0.78 0.192832
Target:  5'- gCCGCGgC-GCCGCgGCGGCGgGGUCGg -3'
miRNA:   3'- -GGUGCgGaUGGCGaCGCCGCgCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 184570 0.77 0.221843
Target:  5'- aCGCGCC-GCCGCgGCGGCGgCGGcCAc -3'
miRNA:   3'- gGUGCGGaUGGCGaCGCCGC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 192131 0.76 0.232309
Target:  5'- gCUGCuGCUguUGCUGCUGcCGGCGCGGUCGc -3'
miRNA:   3'- -GGUG-CGG--AUGGCGAC-GCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 96187 0.75 0.284619
Target:  5'- aCCgGCGCCUGCCGgccgaguccCUGcCGGCGCugGGUCAg -3'
miRNA:   3'- -GG-UGCGGAUGGC---------GAC-GCCGCG--CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 113876 0.74 0.310702
Target:  5'- gCGCGCUcgGCCGCggcgcgcGuCGGCGCGGUCu -3'
miRNA:   3'- gGUGCGGa-UGGCGa------C-GCCGCGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 99897 0.74 0.327205
Target:  5'- uCCACccgGgCUACCGCcaccggaucacgccgUGCGGCGUGGUCu -3'
miRNA:   3'- -GGUG---CgGAUGGCG---------------ACGCCGCGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 152581 0.73 0.35316
Target:  5'- gCCGCGgCgGCCGCcacgucccUGCGGCGCGGg-- -3'
miRNA:   3'- -GGUGCgGaUGGCG--------ACGCCGCGCCagu -5'
10786 3' -61.2 NC_002794.1 + 49407 0.73 0.360623
Target:  5'- gCCACGgCgGCCGCgGCGGCgGCGGcCGu -3'
miRNA:   3'- -GGUGCgGaUGGCGaCGCCG-CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 127598 0.73 0.360623
Target:  5'- uCUGCGCg-GCCGCUgaGCGGCGCGGa-- -3'
miRNA:   3'- -GGUGCGgaUGGCGA--CGCCGCGCCagu -5'
10786 3' -61.2 NC_002794.1 + 53750 0.73 0.383665
Target:  5'- gCCGCuGCCgccGCCGCUGcCGGCgGCGGg-- -3'
miRNA:   3'- -GGUG-CGGa--UGGCGAC-GCCG-CGCCagu -5'
10786 3' -61.2 NC_002794.1 + 43893 0.73 0.39156
Target:  5'- gCCGuCGCCggcgucUCGUgaggaGCGGCGCGGUCAg -3'
miRNA:   3'- -GGU-GCGGau----GGCGa----CGCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 151591 0.72 0.39956
Target:  5'- gCGCGCC-GCCGCcGCGGgccCGCGGUUc -3'
miRNA:   3'- gGUGCGGaUGGCGaCGCC---GCGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 107853 0.72 0.421673
Target:  5'- cCUACGUCUACCugcuccacugcaucGCggagGCGGCGCGG-CGg -3'
miRNA:   3'- -GGUGCGGAUGG--------------CGa---CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 188327 0.72 0.441081
Target:  5'- uCCucguCGCC-GCCGCcgGCGGCGCcGUCGc -3'
miRNA:   3'- -GGu---GCGGaUGGCGa-CGCCGCGcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 112744 0.72 0.441081
Target:  5'- gCGCGgUgcuCCGCgGCGGCGgGGUCGg -3'
miRNA:   3'- gGUGCgGau-GGCGaCGCCGCgCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 37738 0.72 0.441081
Target:  5'- gCgGCGCC-GCCgGCgGCGGCGCGG-CGg -3'
miRNA:   3'- -GgUGCGGaUGG-CGaCGCCGCGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.