miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 76526 0.71 0.458362
Target:  5'- cCCAgGCCaccgGCCGCgGCGccgaCGCGGUCGc -3'
miRNA:   3'- -GGUgCGGa---UGGCGaCGCc---GCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 89715 0.71 0.458362
Target:  5'- gCCGCgguGCCgauCCGC-GCGGCGuCGGUCc -3'
miRNA:   3'- -GGUG---CGGau-GGCGaCGCCGC-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 154361 0.71 0.458362
Target:  5'- cCCGCGCgguccagGCCGCgGCGGCgGCGGgCAc -3'
miRNA:   3'- -GGUGCGga-----UGGCGaCGCCG-CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 80972 0.71 0.467137
Target:  5'- uCCGCGucauCCUGCCGCUGCccuccGGUcUGGUCAu -3'
miRNA:   3'- -GGUGC----GGAUGGCGACG-----CCGcGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 111612 0.71 0.467137
Target:  5'- cCCAgGCCggcgggGCCGCcGCGGCcgccgcCGGUCGg -3'
miRNA:   3'- -GGUgCGGa-----UGGCGaCGCCGc-----GCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 100753 0.71 0.475998
Target:  5'- gCGCGUCUAUCGCUGgcCGGuCGCGGa-- -3'
miRNA:   3'- gGUGCGGAUGGCGAC--GCC-GCGCCagu -5'
10786 3' -61.2 NC_002794.1 + 183195 0.71 0.475998
Target:  5'- aCGCGCCgccaCGCcgGCGGCGCGuUCGu -3'
miRNA:   3'- gGUGCGGaug-GCGa-CGCCGCGCcAGU- -5'
10786 3' -61.2 NC_002794.1 + 65757 0.71 0.475998
Target:  5'- cCCGCGCCgccGCCGCccGUGGUGgGGcCGa -3'
miRNA:   3'- -GGUGCGGa--UGGCGa-CGCCGCgCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 184029 0.71 0.475998
Target:  5'- gCCACGgC-ACCGC-GCGcagcGCGCGGUCGc -3'
miRNA:   3'- -GGUGCgGaUGGCGaCGC----CGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 121811 0.71 0.493059
Target:  5'- cCgGCGCCUGCCGCUGCaGGaucgcuaCGaCGGcCAa -3'
miRNA:   3'- -GgUGCGGAUGGCGACG-CC-------GC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 61875 0.71 0.493966
Target:  5'- gCGCGCCgucgucggcGCCGCgcgGCGaGCGCGG-CGa -3'
miRNA:   3'- gGUGCGGa--------UGGCGa--CGC-CGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 127352 0.71 0.493966
Target:  5'- -gACGCUcGCgGCgGCGGCGCGGcCGc -3'
miRNA:   3'- ggUGCGGaUGgCGaCGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 112498 0.71 0.493966
Target:  5'- uCCACGU--ACCGCgaGCGGuCGCGGUg- -3'
miRNA:   3'- -GGUGCGgaUGGCGa-CGCC-GCGCCAgu -5'
10786 3' -61.2 NC_002794.1 + 149264 0.7 0.503065
Target:  5'- aCCAC-CCUcguccCCGCcgGCGGCGCGG-CGg -3'
miRNA:   3'- -GGUGcGGAu----GGCGa-CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 100808 0.7 0.521475
Target:  5'- uCUGCGCCUACgUGCcggGCGGCGgGGgccggCAg -3'
miRNA:   3'- -GGUGCGGAUG-GCGa--CGCCGCgCCa----GU- -5'
10786 3' -61.2 NC_002794.1 + 105433 0.7 0.521475
Target:  5'- gC-CGCC-GCCGCgccgGCGGCGCcGUCGu -3'
miRNA:   3'- gGuGCGGaUGGCGa---CGCCGCGcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 145809 0.7 0.52519
Target:  5'- aCgACGCC-GCCGCcgGCGGCGagccgagcgcgucgaCGGUCGc -3'
miRNA:   3'- -GgUGCGGaUGGCGa-CGCCGC---------------GCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 126383 0.7 0.529846
Target:  5'- -gGCGCCgggGCCuGCgcgGCGGCgugcgcgGCGGUCGc -3'
miRNA:   3'- ggUGCGGa--UGG-CGa--CGCCG-------CGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 186271 0.7 0.530779
Target:  5'- aUCAcCGCCUGgCGCgGCGGCaccGCGGcCAg -3'
miRNA:   3'- -GGU-GCGGAUgGCGaCGCCG---CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 151913 0.7 0.530779
Target:  5'- gCCugGCCgagcuCCGuCUGCGGCGCa---- -3'
miRNA:   3'- -GGugCGGau---GGC-GACGCCGCGccagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.