miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 53251 0.66 0.758798
Target:  5'- gCCGCGCCggcgucGCCGCgcgacaaCGGgGCGG-CGa -3'
miRNA:   3'- -GGUGCGGa-----UGGCGac-----GCCgCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 129928 0.66 0.758798
Target:  5'- gCCAgGCCguggcgACgGCgGCGGCgGCGGcUCu -3'
miRNA:   3'- -GGUgCGGa-----UGgCGaCGCCG-CGCC-AGu -5'
10786 3' -61.2 NC_002794.1 + 116126 0.66 0.758798
Target:  5'- gUC-CGCCgcgGCgGCgGCGGCGgCGGcCAg -3'
miRNA:   3'- -GGuGCGGa--UGgCGaCGCCGC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 137602 0.66 0.758798
Target:  5'- gCCGcCGCCgGCgGUcGCGGCGgCGGUg- -3'
miRNA:   3'- -GGU-GCGGaUGgCGaCGCCGC-GCCAgu -5'
10786 3' -61.2 NC_002794.1 + 143575 0.66 0.758798
Target:  5'- gCGCGCCguCCuCgGCGGCGCuguGGUCGa -3'
miRNA:   3'- gGUGCGGauGGcGaCGCCGCG---CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 35725 0.66 0.758798
Target:  5'- aCCugGCCU-CCG--GCGGCcGCGcGUCu -3'
miRNA:   3'- -GGugCGGAuGGCgaCGCCG-CGC-CAGu -5'
10786 3' -61.2 NC_002794.1 + 20373 0.66 0.749731
Target:  5'- cCUGCGCCggAUCGUcgacGCGGUGCGG-CGg -3'
miRNA:   3'- -GGUGCGGa-UGGCGa---CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 103088 0.66 0.749731
Target:  5'- -aGCGUC-GCgGCccGCGcGCGCGGUCAc -3'
miRNA:   3'- ggUGCGGaUGgCGa-CGC-CGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 56149 0.66 0.749731
Target:  5'- gUACgGCgUGCCGCaGCGGCaGCGGcCc -3'
miRNA:   3'- gGUG-CGgAUGGCGaCGCCG-CGCCaGu -5'
10786 3' -61.2 NC_002794.1 + 22559 0.66 0.748819
Target:  5'- gCCAcCGCCgacacggcacgGCCGCUGUccaagucgcgcucGGCaCGGUCGg -3'
miRNA:   3'- -GGU-GCGGa----------UGGCGACG-------------CCGcGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 68895 0.66 0.740572
Target:  5'- cCCACGgCUACCGaucGCGuCGCGGg-- -3'
miRNA:   3'- -GGUGCgGAUGGCga-CGCcGCGCCagu -5'
10786 3' -61.2 NC_002794.1 + 45825 0.66 0.740572
Target:  5'- aCGCGCCcgugaGCaGCUccccgucguacGCGGCGCGGcUCAc -3'
miRNA:   3'- gGUGCGGa----UGgCGA-----------CGCCGCGCC-AGU- -5'
10786 3' -61.2 NC_002794.1 + 118724 0.66 0.740572
Target:  5'- gCUGCGCgUACugggCGCUGCucGGCGCGcUCAg -3'
miRNA:   3'- -GGUGCGgAUG----GCGACG--CCGCGCcAGU- -5'
10786 3' -61.2 NC_002794.1 + 192959 0.66 0.740572
Target:  5'- aCAgGCCgacgaGCCG-UGCaggaccagGGCGCGGUCGc -3'
miRNA:   3'- gGUgCGGa----UGGCgACG--------CCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 114749 0.66 0.731328
Target:  5'- cCgGCGCCgcCCGC--CGGCGcCGGUCc -3'
miRNA:   3'- -GgUGCGGauGGCGacGCCGC-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 123975 0.66 0.731328
Target:  5'- gUACGUCgaccaCGCcGUGGCGCcGGUCAu -3'
miRNA:   3'- gGUGCGGaug--GCGaCGCCGCG-CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 190104 0.66 0.731328
Target:  5'- cCCACGCCccGCCGUccGCGccgaaGCGGUCc -3'
miRNA:   3'- -GGUGCGGa-UGGCGa-CGCcg---CGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 101490 0.66 0.731328
Target:  5'- -aACGCCggcgGCCGgUccgaGCGGUGCGG-CAc -3'
miRNA:   3'- ggUGCGGa---UGGCgA----CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 92437 0.66 0.731328
Target:  5'- aCACGCUgGCCGUgcgggGCcGCGCGGacuUCAu -3'
miRNA:   3'- gGUGCGGaUGGCGa----CGcCGCGCC---AGU- -5'
10786 3' -61.2 NC_002794.1 + 141595 0.66 0.72854
Target:  5'- cCCGCGUC-GCCGg-GCGGCucggcgaccggcucGCGGUCu -3'
miRNA:   3'- -GGUGCGGaUGGCgaCGCCG--------------CGCCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.