miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 147419 0.67 0.725745
Target:  5'- gCUACGCgUAcCCGCUGCugcuggacggcuacgGGCGCGuGUa- -3'
miRNA:   3'- -GGUGCGgAU-GGCGACG---------------CCGCGC-CAgu -5'
10786 3' -61.2 NC_002794.1 + 71324 0.67 0.722008
Target:  5'- gCGCGCC-ACCuCgGCGGCGauGUCGu -3'
miRNA:   3'- gGUGCGGaUGGcGaCGCCGCgcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 14353 0.67 0.722008
Target:  5'- aCCGaggaGuCUUACCGCUGCGuGCuGuCGGUCc -3'
miRNA:   3'- -GGUg---C-GGAUGGCGACGC-CG-C-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 12191 0.67 0.722008
Target:  5'- gCCGCgGCCgggcGCCGCUcggacgugccgGCGGCGuCGG-CGg -3'
miRNA:   3'- -GGUG-CGGa---UGGCGA-----------CGCCGC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 111319 0.67 0.722008
Target:  5'- -gACGCCggGCCa--GCGGCGCGGgccgCAg -3'
miRNA:   3'- ggUGCGGa-UGGcgaCGCCGCGCCa---GU- -5'
10786 3' -61.2 NC_002794.1 + 35059 0.67 0.722008
Target:  5'- aCCAUGaCC-GCCGCUGCgugGGCGCccuGGUg- -3'
miRNA:   3'- -GGUGC-GGaUGGCGACG---CCGCG---CCAgu -5'
10786 3' -61.2 NC_002794.1 + 146856 0.67 0.722008
Target:  5'- gCGCGUCguUCGCguucggguggGgGGCGCGGUCGg -3'
miRNA:   3'- gGUGCGGauGGCGa---------CgCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 56270 0.67 0.722008
Target:  5'- aCCGgGCCgagcagcagGCgGCagagcacgaUGCGcGCGCGGUCGc -3'
miRNA:   3'- -GGUgCGGa--------UGgCG---------ACGC-CGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 184513 0.67 0.722008
Target:  5'- gCGgGCC--CCGCgcGCGGCGCGGgCGa -3'
miRNA:   3'- gGUgCGGauGGCGa-CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 177845 0.67 0.722008
Target:  5'- --uCGCCUGCCauGC-GCGaGCGCGGcCAc -3'
miRNA:   3'- gguGCGGAUGG--CGaCGC-CGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 78965 0.67 0.721072
Target:  5'- aCCGcCGCCaccaacacUGCUGCUGCGGCcgcucccggagucGCGG-CGa -3'
miRNA:   3'- -GGU-GCGG--------AUGGCGACGCCG-------------CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 140763 0.67 0.712619
Target:  5'- gCACGCCaACCuGCggGCGGCcCGG-CAg -3'
miRNA:   3'- gGUGCGGaUGG-CGa-CGCCGcGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 107207 0.67 0.711677
Target:  5'- gCCuCGCCcggcGCCGCcggGCGGCGCGcgacgggggcggcGUCGc -3'
miRNA:   3'- -GGuGCGGa---UGGCGa--CGCCGCGC-------------CAGU- -5'
10786 3' -61.2 NC_002794.1 + 20431 0.67 0.706956
Target:  5'- cCCGCGCCggaggacgugcACCGCuggagccgccucUGCGGCcccgaagacgugcacGUGGUCAu -3'
miRNA:   3'- -GGUGCGGa----------UGGCG------------ACGCCG---------------CGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 111753 0.67 0.703169
Target:  5'- gCugGC--GCCGC-GCGGCGCcGUCGg -3'
miRNA:   3'- gGugCGgaUGGCGaCGCCGCGcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 146988 0.67 0.703169
Target:  5'- uCgGCGCCgccgGCCGaCgucgGCGGCgGCGGcCGc -3'
miRNA:   3'- -GgUGCGGa---UGGC-Ga---CGCCG-CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 32294 0.67 0.703169
Target:  5'- gCCGcCGCC-GCCGCgGCGGCcgcgccggccGCGGcCGg -3'
miRNA:   3'- -GGU-GCGGaUGGCGaCGCCG----------CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 80217 0.67 0.703169
Target:  5'- aCgACGCCUcGCCGCacacCGGCGCcGUCu -3'
miRNA:   3'- -GgUGCGGA-UGGCGac--GCCGCGcCAGu -5'
10786 3' -61.2 NC_002794.1 + 142471 0.67 0.702221
Target:  5'- -aGCGCCggcACCGUggacgcgUGCGGCGcCGG-CAg -3'
miRNA:   3'- ggUGCGGa--UGGCG-------ACGCCGC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 179822 0.67 0.702221
Target:  5'- uCCGCGCaCUcgucgGCCucggucaGC-GUGGCGCGGUUAa -3'
miRNA:   3'- -GGUGCG-GA-----UGG-------CGaCGCCGCGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.