miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 248 0.68 0.664909
Target:  5'- cCCACcccggaCUGCCGCcGCGcGCGCGGa-- -3'
miRNA:   3'- -GGUGcg----GAUGGCGaCGC-CGCGCCagu -5'
10786 3' -61.2 NC_002794.1 + 2691 0.67 0.684115
Target:  5'- cCCACGCCUucugaCGUguucagggGCGGUcugggGCGGUCu -3'
miRNA:   3'- -GGUGCGGAug---GCGa-------CGCCG-----CGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 6118 0.66 0.776623
Target:  5'- uCCGaGCCUACCuGUUGCGGUcgaucgggggGCGGa-- -3'
miRNA:   3'- -GGUgCGGAUGG-CGACGCCG----------CGCCagu -5'
10786 3' -61.2 NC_002794.1 + 6931 0.66 0.785367
Target:  5'- gCCGCaGCC-GCCGC-GCGGCacccucuCGGUCu -3'
miRNA:   3'- -GGUG-CGGaUGGCGaCGCCGc------GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 11580 0.68 0.635938
Target:  5'- aCugGUCUGCC-CcGCGGUGaCGGUCc -3'
miRNA:   3'- gGugCGGAUGGcGaCGCCGC-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 12191 0.67 0.722008
Target:  5'- gCCGCgGCCgggcGCCGCUcggacgugccgGCGGCGuCGG-CGg -3'
miRNA:   3'- -GGUG-CGGa---UGGCGA-----------CGCCGC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 12396 0.66 0.776623
Target:  5'- gCCugGCCgacaACCGCacgcgGaCGGCGCGcGcCGa -3'
miRNA:   3'- -GGugCGGa---UGGCGa----C-GCCGCGC-CaGU- -5'
10786 3' -61.2 NC_002794.1 + 14353 0.67 0.722008
Target:  5'- aCCGaggaGuCUUACCGCUGCGuGCuGuCGGUCc -3'
miRNA:   3'- -GGUg---C-GGAUGGCGACGC-CG-C-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 14480 0.69 0.597303
Target:  5'- gCCGCGCUcGCUGUUcGCGGCgGCGGcCc -3'
miRNA:   3'- -GGUGCGGaUGGCGA-CGCCG-CGCCaGu -5'
10786 3' -61.2 NC_002794.1 + 14650 0.69 0.587686
Target:  5'- -gACGCCgg-CGCcGCGGCGuCGGUCc -3'
miRNA:   3'- ggUGCGGaugGCGaCGCCGC-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 18685 0.67 0.674528
Target:  5'- gCCGcCGCCgucuCCgGCacgGCGGCGgCGGUCc -3'
miRNA:   3'- -GGU-GCGGau--GG-CGa--CGCCGC-GCCAGu -5'
10786 3' -61.2 NC_002794.1 + 19319 0.68 0.664909
Target:  5'- cCCACGCCg--CGCUgGCGacccgcGCGCcGGUCAc -3'
miRNA:   3'- -GGUGCGGaugGCGA-CGC------CGCG-CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 19513 0.68 0.655266
Target:  5'- gUCGCGCCgcucggAgCGCcggcGCGGCGCGGcCc -3'
miRNA:   3'- -GGUGCGGa-----UgGCGa---CGCCGCGCCaGu -5'
10786 3' -61.2 NC_002794.1 + 20373 0.66 0.749731
Target:  5'- cCUGCGCCggAUCGUcgacGCGGUGCGG-CGg -3'
miRNA:   3'- -GGUGCGGa-UGGCGa---CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 20431 0.67 0.706956
Target:  5'- cCCGCGCCggaggacgugcACCGCuggagccgccucUGCGGCcccgaagacgugcacGUGGUCAu -3'
miRNA:   3'- -GGUGCGGa----------UGGCG------------ACGCCG---------------CGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 21954 0.69 0.597303
Target:  5'- -aAgGCCgucgGCCGCUcccGCGGCGCcGUCGu -3'
miRNA:   3'- ggUgCGGa---UGGCGA---CGCCGCGcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 22559 0.66 0.748819
Target:  5'- gCCAcCGCCgacacggcacgGCCGCUGUccaagucgcgcucGGCaCGGUCGg -3'
miRNA:   3'- -GGU-GCGGa----------UGGCGACG-------------CCGcGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 32294 0.67 0.703169
Target:  5'- gCCGcCGCC-GCCGCgGCGGCcgcgccggccGCGGcCGg -3'
miRNA:   3'- -GGU-GCGGaUGGCGaCGCCG----------CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 35059 0.67 0.722008
Target:  5'- aCCAUGaCC-GCCGCUGCgugGGCGCccuGGUg- -3'
miRNA:   3'- -GGUGC-GGaUGGCGACG---CCGCG---CCAgu -5'
10786 3' -61.2 NC_002794.1 + 35725 0.66 0.758798
Target:  5'- aCCugGCCU-CCG--GCGGCcGCGcGUCu -3'
miRNA:   3'- -GGugCGGAuGGCgaCGCCG-CGC-CAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.