miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 37492 0.68 0.635938
Target:  5'- gCGCGaCCaGCCGCacGCGcGUGUGGUCGc -3'
miRNA:   3'- gGUGC-GGaUGGCGa-CGC-CGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 37738 0.72 0.441081
Target:  5'- gCgGCGCC-GCCgGCgGCGGCGCGG-CGg -3'
miRNA:   3'- -GgUGCGGaUGG-CGaCGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 38124 0.69 0.568544
Target:  5'- gCCGCGCCa---GCUGgGGCGUGGagUCGa -3'
miRNA:   3'- -GGUGCGGauggCGACgCCGCGCC--AGU- -5'
10786 3' -61.2 NC_002794.1 + 38473 0.67 0.684115
Target:  5'- gCGCGCCcuuUAUgggcggaggaagCGCgGCGGCGCcGGUCGc -3'
miRNA:   3'- gGUGCGG---AUG------------GCGaCGCCGCG-CCAGU- -5'
10786 3' -61.2 NC_002794.1 + 38622 0.66 0.785367
Target:  5'- gCGCGUCccgacucGCCGgUGCGGCGCGa--- -3'
miRNA:   3'- gGUGCGGa------UGGCgACGCCGCGCcagu -5'
10786 3' -61.2 NC_002794.1 + 41239 0.69 0.578098
Target:  5'- cCCACGCCgcgGCCGCcgacgccgGCGGCcCGucGUCGc -3'
miRNA:   3'- -GGUGCGGa--UGGCGa-------CGCCGcGC--CAGU- -5'
10786 3' -61.2 NC_002794.1 + 43893 0.73 0.39156
Target:  5'- gCCGuCGCCggcgucUCGUgaggaGCGGCGCGGUCAg -3'
miRNA:   3'- -GGU-GCGGau----GGCGa----CGCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 44700 0.67 0.684115
Target:  5'- aCCGcCGCCcgGCCGCgaccGCGGCGaCG-UCGg -3'
miRNA:   3'- -GGU-GCGGa-UGGCGa---CGCCGC-GCcAGU- -5'
10786 3' -61.2 NC_002794.1 + 45825 0.66 0.740572
Target:  5'- aCGCGCCcgugaGCaGCUccccgucguacGCGGCGCGGcUCAc -3'
miRNA:   3'- gGUGCGGa----UGgCGA-----------CGCCGCGCC-AGU- -5'
10786 3' -61.2 NC_002794.1 + 49012 0.81 0.124631
Target:  5'- cCCGCGCCgcggcgGCCGCgGCgucguccGGCGCGGUCGu -3'
miRNA:   3'- -GGUGCGGa-----UGGCGaCG-------CCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 49407 0.73 0.360623
Target:  5'- gCCACGgCgGCCGCgGCGGCgGCGGcCGu -3'
miRNA:   3'- -GGUGCgGaUGGCGaCGCCG-CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 53251 0.66 0.758798
Target:  5'- gCCGCGCCggcgucGCCGCgcgacaaCGGgGCGG-CGa -3'
miRNA:   3'- -GGUGCGGa-----UGGCGac-----GCCgCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 53750 0.73 0.383665
Target:  5'- gCCGCuGCCgccGCCGCUGcCGGCgGCGGg-- -3'
miRNA:   3'- -GGUG-CGGa--UGGCGAC-GCCG-CGCCagu -5'
10786 3' -61.2 NC_002794.1 + 56149 0.66 0.749731
Target:  5'- gUACgGCgUGCCGCaGCGGCaGCGGcCc -3'
miRNA:   3'- gGUG-CGgAUGGCGaCGCCG-CGCCaGu -5'
10786 3' -61.2 NC_002794.1 + 56270 0.67 0.722008
Target:  5'- aCCGgGCCgagcagcagGCgGCagagcacgaUGCGcGCGCGGUCGc -3'
miRNA:   3'- -GGUgCGGa--------UGgCG---------ACGC-CGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 58316 0.66 0.776623
Target:  5'- gCCGCGCuCUGCaCGCcGCGcGUGCucGUCGg -3'
miRNA:   3'- -GGUGCG-GAUG-GCGaCGC-CGCGc-CAGU- -5'
10786 3' -61.2 NC_002794.1 + 58528 0.67 0.684115
Target:  5'- gCACGCCgagGCCuucGCcGCGGCGCGcG-CGc -3'
miRNA:   3'- gGUGCGGa--UGG---CGaCGCCGCGC-CaGU- -5'
10786 3' -61.2 NC_002794.1 + 60585 0.68 0.6166
Target:  5'- uCCACGCCggGCCuGCUGgaGGCGCaG-CAg -3'
miRNA:   3'- -GGUGCGGa-UGG-CGACg-CCGCGcCaGU- -5'
10786 3' -61.2 NC_002794.1 + 61136 0.67 0.692712
Target:  5'- gCGCGCCc-CUGCUGCcgcccgaccccgaGcGCGCGGUCc -3'
miRNA:   3'- gGUGCGGauGGCGACG-------------C-CGCGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 61550 0.69 0.606943
Target:  5'- aCgACGCC-GCCGCggcgGCGGCcGCcGUCGa -3'
miRNA:   3'- -GgUGCGGaUGGCGa---CGCCG-CGcCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.