miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 3' -61.2 NC_002794.1 + 194312 0.69 0.578098
Target:  5'- gCCAgCGCCUGCCGCaGCGGauCGCGc--- -3'
miRNA:   3'- -GGU-GCGGAUGGCGaCGCC--GCGCcagu -5'
10786 3' -61.2 NC_002794.1 + 192959 0.66 0.740572
Target:  5'- aCAgGCCgacgaGCCG-UGCaggaccagGGCGCGGUCGc -3'
miRNA:   3'- gGUgCGGa----UGGCgACG--------CCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 192131 0.76 0.232309
Target:  5'- gCUGCuGCUguUGCUGCUGcCGGCGCGGUCGc -3'
miRNA:   3'- -GGUG-CGG--AUGGCGAC-GCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 192020 0.68 0.626267
Target:  5'- gCCGCGgCUGCUGUuucUGUGGCgGCGG-CGg -3'
miRNA:   3'- -GGUGCgGAUGGCG---ACGCCG-CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 191535 0.66 0.785367
Target:  5'- cCCGCGCCUcCCGCcGCaGuCG-GGUCc -3'
miRNA:   3'- -GGUGCGGAuGGCGaCGcC-GCgCCAGu -5'
10786 3' -61.2 NC_002794.1 + 190146 0.69 0.578098
Target:  5'- aCCACGCgUACUGCUgGCGGCG-GcUCu -3'
miRNA:   3'- -GGUGCGgAUGGCGA-CGCCGCgCcAGu -5'
10786 3' -61.2 NC_002794.1 + 190104 0.66 0.731328
Target:  5'- cCCACGCCccGCCGUccGCGccgaaGCGGUCc -3'
miRNA:   3'- -GGUGCGGa-UGGCGa-CGCcg---CGCCAGu -5'
10786 3' -61.2 NC_002794.1 + 188327 0.72 0.441081
Target:  5'- uCCucguCGCC-GCCGCcgGCGGCGCcGUCGc -3'
miRNA:   3'- -GGu---GCGGaUGGCGa-CGCCGCGcCAGU- -5'
10786 3' -61.2 NC_002794.1 + 187943 0.68 0.6166
Target:  5'- gUCACGCgUGCgCGC-GCGaGCGCGGg-- -3'
miRNA:   3'- -GGUGCGgAUG-GCGaCGC-CGCGCCagu -5'
10786 3' -61.2 NC_002794.1 + 187444 0.68 0.626267
Target:  5'- gCCGCGCCgucugccGCCGCU-CGGCGuCGcUCGg -3'
miRNA:   3'- -GGUGCGGa------UGGCGAcGCCGC-GCcAGU- -5'
10786 3' -61.2 NC_002794.1 + 186501 0.69 0.606943
Target:  5'- gCGCGCCUccccGCCGUggaaGCaGCGCGG-CAc -3'
miRNA:   3'- gGUGCGGA----UGGCGa---CGcCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 186271 0.7 0.530779
Target:  5'- aUCAcCGCCUGgCGCgGCGGCaccGCGGcCAg -3'
miRNA:   3'- -GGU-GCGGAUgGCGaCGCCG---CGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 185752 0.67 0.674528
Target:  5'- aCGCGuCCaGCCGC--CGGCGCGGcCGc -3'
miRNA:   3'- gGUGC-GGaUGGCGacGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 185564 0.69 0.597303
Target:  5'- cCCGC-CCUGCCGCggcaggGCG-CGCGGcUCu -3'
miRNA:   3'- -GGUGcGGAUGGCGa-----CGCcGCGCC-AGu -5'
10786 3' -61.2 NC_002794.1 + 185162 0.79 0.151851
Target:  5'- aCGCGuCCU-CCGCcggcGCGGCGCGGUCGg -3'
miRNA:   3'- gGUGC-GGAuGGCGa---CGCCGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 184570 0.77 0.221843
Target:  5'- aCGCGCC-GCCGCgGCGGCGgCGGcCAc -3'
miRNA:   3'- gGUGCGGaUGGCGaCGCCGC-GCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 184513 0.67 0.722008
Target:  5'- gCGgGCC--CCGCgcGCGGCGCGGgCGa -3'
miRNA:   3'- gGUgCGGauGGCGa-CGCCGCGCCaGU- -5'
10786 3' -61.2 NC_002794.1 + 184029 0.71 0.475998
Target:  5'- gCCACGgC-ACCGC-GCGcagcGCGCGGUCGc -3'
miRNA:   3'- -GGUGCgGaUGGCGaCGC----CGCGCCAGU- -5'
10786 3' -61.2 NC_002794.1 + 183195 0.71 0.475998
Target:  5'- aCGCGCCgccaCGCcgGCGGCGCGuUCGu -3'
miRNA:   3'- gGUGCGGaug-GCGa-CGCCGCGCcAGU- -5'
10786 3' -61.2 NC_002794.1 + 182784 0.69 0.606943
Target:  5'- uCCACcaCCUGCCaGCgcaCGGuCGCGGUCGa -3'
miRNA:   3'- -GGUGc-GGAUGG-CGac-GCC-GCGCCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.