Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10786 | 3' | -61.2 | NC_002794.1 | + | 83635 | 1.09 | 0.001449 |
Target: 5'- uCCACGCCUACCGCUGCGGCGCGGUCAc -3' miRNA: 3'- -GGUGCGGAUGGCGACGCCGCGCCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 122639 | 0.66 | 0.771321 |
Target: 5'- gCACGCgguggacgugauCUACCuGCUgGCGGCGCaggcccggcugugccGGUCGc -3' miRNA: 3'- gGUGCG------------GAUGG-CGA-CGCCGCG---------------CCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 75364 | 0.66 | 0.767764 |
Target: 5'- gCCAcCGaCCcGCCGCggccgGCGGCgGCGGcCu -3' miRNA: 3'- -GGU-GC-GGaUGGCGa----CGCCG-CGCCaGu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 66845 | 0.66 | 0.767764 |
Target: 5'- -gGCGCC-GCCGU--CGGCGCGG-CGa -3' miRNA: 3'- ggUGCGGaUGGCGacGCCGCGCCaGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 121957 | 0.66 | 0.767764 |
Target: 5'- -aGCGCCUGgaGCgcuccgUGCGGCuCGGUCc -3' miRNA: 3'- ggUGCGGAUggCG------ACGCCGcGCCAGu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 143278 | 0.66 | 0.762397 |
Target: 5'- cCgGCGCCgGCCGCucggggucgggcgggUGCaGCGCGG-CGg -3' miRNA: 3'- -GgUGCGGaUGGCG---------------ACGcCGCGCCaGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 35725 | 0.66 | 0.758798 |
Target: 5'- aCCugGCCU-CCG--GCGGCcGCGcGUCu -3' miRNA: 3'- -GGugCGGAuGGCgaCGCCG-CGC-CAGu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 143575 | 0.66 | 0.758798 |
Target: 5'- gCGCGCCguCCuCgGCGGCGCuguGGUCGa -3' miRNA: 3'- gGUGCGGauGGcGaCGCCGCG---CCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 137602 | 0.66 | 0.758798 |
Target: 5'- gCCGcCGCCgGCgGUcGCGGCGgCGGUg- -3' miRNA: 3'- -GGU-GCGGaUGgCGaCGCCGC-GCCAgu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 181867 | 0.66 | 0.776623 |
Target: 5'- aUCACGCU--CCGCUGCccCGgGGUCGc -3' miRNA: 3'- -GGUGCGGauGGCGACGccGCgCCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 6118 | 0.66 | 0.776623 |
Target: 5'- uCCGaGCCUACCuGUUGCGGUcgaucgggggGCGGa-- -3' miRNA: 3'- -GGUgCGGAUGG-CGACGCCG----------CGCCagu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 12396 | 0.66 | 0.776623 |
Target: 5'- gCCugGCCgacaACCGCacgcgGaCGGCGCGcGcCGa -3' miRNA: 3'- -GGugCGGa---UGGCGa----C-GCCGCGC-CaGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 191535 | 0.66 | 0.785367 |
Target: 5'- cCCGCGCCUcCCGCcGCaGuCG-GGUCc -3' miRNA: 3'- -GGUGCGGAuGGCGaCGcC-GCgCCAGu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 38622 | 0.66 | 0.785367 |
Target: 5'- gCGCGUCccgacucGCCGgUGCGGCGCGa--- -3' miRNA: 3'- gGUGCGGa------UGGCgACGCCGCGCcagu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 6931 | 0.66 | 0.785367 |
Target: 5'- gCCGCaGCC-GCCGC-GCGGCacccucuCGGUCu -3' miRNA: 3'- -GGUG-CGGaUGGCGaCGCCGc------GCCAGu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 63914 | 0.66 | 0.785367 |
Target: 5'- cUCGCGCCgcgACCGCcGCccGGCcgGCGaGUCu -3' miRNA: 3'- -GGUGCGGa--UGGCGaCG--CCG--CGC-CAGu -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 71775 | 0.66 | 0.776623 |
Target: 5'- nCCGCGCCgu-CGC-GCGGCGa-GUCGc -3' miRNA: 3'- -GGUGCGGaugGCGaCGCCGCgcCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 107793 | 0.66 | 0.776623 |
Target: 5'- aCCGCGUCcGCgCGCauUGCGaacgccuCGCGGUCAc -3' miRNA: 3'- -GGUGCGGaUG-GCG--ACGCc------GCGCCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 105702 | 0.66 | 0.776623 |
Target: 5'- gCCGuCGCCU-CCGCUcgaggcgaucGCGGCgGCcGUCGg -3' miRNA: 3'- -GGU-GCGGAuGGCGA----------CGCCG-CGcCAGU- -5' |
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10786 | 3' | -61.2 | NC_002794.1 | + | 58316 | 0.66 | 0.776623 |
Target: 5'- gCCGCGCuCUGCaCGCcGCGcGUGCucGUCGg -3' miRNA: 3'- -GGUGCG-GAUG-GCGaCGC-CGCGc-CAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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