miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 5' -53.6 NC_002794.1 + 154373 0.66 0.980409
Target:  5'- --aGGCCgcggCggCgGCGGGCACGCCc -3'
miRNA:   3'- gaaCUGGaua-Ga-GgCGUUCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 32275 0.66 0.980409
Target:  5'- --cGGCCga--UCgGCGAGCgACGCCg -3'
miRNA:   3'- gaaCUGGauagAGgCGUUCG-UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 153389 0.66 0.978158
Target:  5'- --cGAUCUGUCcgaUCGCGAGCugucgcgaGCGCCg -3'
miRNA:   3'- gaaCUGGAUAGa--GGCGUUCG--------UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 144089 0.66 0.978158
Target:  5'- -gUGGCCUggcuGUC-CCGCuuGUGCGCCc -3'
miRNA:   3'- gaACUGGA----UAGaGGCGuuCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 75934 0.66 0.978158
Target:  5'- --cGGCCUcagCUCCGCucucguGCcCGCCUu -3'
miRNA:   3'- gaaCUGGAua-GAGGCGuu----CGuGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 185495 0.66 0.977206
Target:  5'- --gGACCgccuauauauucgAUCUCCGCGucGGCgucaugacGCGCCUc -3'
miRNA:   3'- gaaCUGGa------------UAGAGGCGU--UCG--------UGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 148576 0.66 0.975721
Target:  5'- --gGACUga--UCUGCGAGCACgGCCg -3'
miRNA:   3'- gaaCUGGauagAGGCGUUCGUG-CGGa -5'
10786 5' -53.6 NC_002794.1 + 78375 0.66 0.975721
Target:  5'- --cGGCCUG-CUCCGCcAGCgACGgCg -3'
miRNA:   3'- gaaCUGGAUaGAGGCGuUCG-UGCgGa -5'
10786 5' -53.6 NC_002794.1 + 131885 0.66 0.969967
Target:  5'- --cGGCCUcAUCUCggucgcgCGCGGGCACGUg- -3'
miRNA:   3'- gaaCUGGA-UAGAG-------GCGUUCGUGCGga -5'
10786 5' -53.6 NC_002794.1 + 151778 0.66 0.967225
Target:  5'- --aGACCg--CgCCGCu-GCACGCCa -3'
miRNA:   3'- gaaCUGGauaGaGGCGuuCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 124827 0.66 0.967225
Target:  5'- --cGACCUGUCggcgaccaUCUGCAuggcGGC-CGCCg -3'
miRNA:   3'- gaaCUGGAUAG--------AGGCGU----UCGuGCGGa -5'
10786 5' -53.6 NC_002794.1 + 185449 0.66 0.967225
Target:  5'- --gGACagGUCUCCGCGAcaaACGCCg -3'
miRNA:   3'- gaaCUGgaUAGAGGCGUUcg-UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 140893 0.66 0.966273
Target:  5'- -cUGAcCCUGUCgaCCGCGuggcgggaccugcaGGCGCGCUg -3'
miRNA:   3'- gaACU-GGAUAGa-GGCGU--------------UCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 186304 0.67 0.963975
Target:  5'- --cGGCCgGUCgCCGCG-GCGCGCUc -3'
miRNA:   3'- gaaCUGGaUAGaGGCGUuCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 45023 0.67 0.963975
Target:  5'- -gUGGCCgggugCUCCGCAcccAGCGCGgUg -3'
miRNA:   3'- gaACUGGaua--GAGGCGU---UCGUGCgGa -5'
10786 5' -53.6 NC_002794.1 + 92904 0.67 0.963975
Target:  5'- --aGACCaagCUCUGCAAGCugucCGUCUg -3'
miRNA:   3'- gaaCUGGauaGAGGCGUUCGu---GCGGA- -5'
10786 5' -53.6 NC_002794.1 + 106842 0.67 0.963975
Target:  5'- --cGGCCUGcggCUCCGCcuacaacaucGAGCucguCGCCUu -3'
miRNA:   3'- gaaCUGGAUa--GAGGCG----------UUCGu---GCGGA- -5'
10786 5' -53.6 NC_002794.1 + 142088 0.67 0.960507
Target:  5'- -gUGGCCggaAUUUCCGaaCAAGC-CGCCUc -3'
miRNA:   3'- gaACUGGa--UAGAGGC--GUUCGuGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 48334 0.67 0.960507
Target:  5'- --cGGCCcgGUaCUcCCGguGGUACGCCUg -3'
miRNA:   3'- gaaCUGGa-UA-GA-GGCguUCGUGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 14582 0.67 0.956814
Target:  5'- --cGACCgaagCgggCCGUggcGAGCGCGCCg -3'
miRNA:   3'- gaaCUGGaua-Ga--GGCG---UUCGUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.