miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 5' -53.6 NC_002794.1 + 101117 0.67 0.952893
Target:  5'- --aGGCCg----CCGCcguGGCGCGCCUg -3'
miRNA:   3'- gaaCUGGauagaGGCGu--UCGUGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 112987 0.67 0.952893
Target:  5'- gCUUGGCCUccugcagCUCCaggaGCGAGCGCaGCUUg -3'
miRNA:   3'- -GAACUGGAua-----GAGG----CGUUCGUG-CGGA- -5'
10786 5' -53.6 NC_002794.1 + 90526 0.67 0.948739
Target:  5'- --cGGCgCUcGUCUCCGCGGGUgACGUCg -3'
miRNA:   3'- gaaCUG-GA-UAGAGGCGUUCG-UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 48634 0.67 0.948739
Target:  5'- --cGGCC-GUCggggcCCGCGAGC-CGCCg -3'
miRNA:   3'- gaaCUGGaUAGa----GGCGUUCGuGCGGa -5'
10786 5' -53.6 NC_002794.1 + 145383 0.67 0.948739
Target:  5'- --aGACg---CUCCGCucgguGGCGCGCCg -3'
miRNA:   3'- gaaCUGgauaGAGGCGu----UCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 91660 0.68 0.934851
Target:  5'- -cUGcACCUGUCggcgCaCGUggGCGCGCUg -3'
miRNA:   3'- gaAC-UGGAUAGa---G-GCGuuCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 60218 0.68 0.92974
Target:  5'- --cGACCg--CgacgCCGcCGAGCGCGCCc -3'
miRNA:   3'- gaaCUGGauaGa---GGC-GUUCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 187702 0.69 0.918787
Target:  5'- gUUGGCC-GUCUCCGUcacGGGCcgcaacACGCCg -3'
miRNA:   3'- gAACUGGaUAGAGGCG---UUCG------UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 121632 0.69 0.918787
Target:  5'- --gGACgaGUCUCCGgGAGaACGCCg -3'
miRNA:   3'- gaaCUGgaUAGAGGCgUUCgUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 183651 0.69 0.912947
Target:  5'- --gGGCCgccuUCUCCGCGccgGGCccgaGCGCCg -3'
miRNA:   3'- gaaCUGGau--AGAGGCGU---UCG----UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 187213 0.69 0.893991
Target:  5'- --cGACC-AUCUCCaGCGgcuccGGCugGCCg -3'
miRNA:   3'- gaaCUGGaUAGAGG-CGU-----UCGugCGGa -5'
10786 5' -53.6 NC_002794.1 + 185343 0.69 0.887203
Target:  5'- --cGACCgcUCgcgcgccgCCGCGAGCGgGCCg -3'
miRNA:   3'- gaaCUGGauAGa-------GGCGUUCGUgCGGa -5'
10786 5' -53.6 NC_002794.1 + 48915 0.7 0.880185
Target:  5'- --gGGCCg--CUCCGCAGcGCcaGCGCCa -3'
miRNA:   3'- gaaCUGGauaGAGGCGUU-CG--UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 19795 0.7 0.880185
Target:  5'- -cUGACgCUG-CUCCGCucggaccGCGCGCCg -3'
miRNA:   3'- gaACUG-GAUaGAGGCGuu-----CGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 122765 0.7 0.849926
Target:  5'- -cUGAUCgagcgCUCCGCGAGCG-GCCUc -3'
miRNA:   3'- gaACUGGaua--GAGGCGUUCGUgCGGA- -5'
10786 5' -53.6 NC_002794.1 + 179187 0.71 0.841843
Target:  5'- --gGACCa----CCGCAGGCACGCCc -3'
miRNA:   3'- gaaCUGGauagaGGCGUUCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 180788 0.71 0.807653
Target:  5'- -gUGGCCggggAUCUCCGUuuGAGCgACGUCUc -3'
miRNA:   3'- gaACUGGa---UAGAGGCG--UUCG-UGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 68686 0.73 0.712139
Target:  5'- -gUGGCCgccccaccccaGUCUCCGCGAGCugcuCGCCc -3'
miRNA:   3'- gaACUGGa----------UAGAGGCGUUCGu---GCGGa -5'
10786 5' -53.6 NC_002794.1 + 34127 0.73 0.702052
Target:  5'- --cGACCUGU-UCCGCAAGCAgaugaucaaaUGCCUg -3'
miRNA:   3'- gaaCUGGAUAgAGGCGUUCGU----------GCGGA- -5'
10786 5' -53.6 NC_002794.1 + 19893 0.75 0.640589
Target:  5'- --cGACCg--CUgCCGCGAGCACGaCCUg -3'
miRNA:   3'- gaaCUGGauaGA-GGCGUUCGUGC-GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.