miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10786 5' -53.6 NC_002794.1 + 14582 0.67 0.956814
Target:  5'- --cGACCgaagCgggCCGUggcGAGCGCGCCg -3'
miRNA:   3'- gaaCUGGaua-Ga--GGCG---UUCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 19795 0.7 0.880185
Target:  5'- -cUGACgCUG-CUCCGCucggaccGCGCGCCg -3'
miRNA:   3'- gaACUG-GAUaGAGGCGuu-----CGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 19893 0.75 0.640589
Target:  5'- --cGACCg--CUgCCGCGAGCACGaCCUg -3'
miRNA:   3'- gaaCUGGauaGA-GGCGUUCGUGC-GGA- -5'
10786 5' -53.6 NC_002794.1 + 32275 0.66 0.980409
Target:  5'- --cGGCCga--UCgGCGAGCgACGCCg -3'
miRNA:   3'- gaaCUGGauagAGgCGUUCG-UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 34127 0.73 0.702052
Target:  5'- --cGACCUGU-UCCGCAAGCAgaugaucaaaUGCCUg -3'
miRNA:   3'- gaaCUGGAUAgAGGCGUUCGU----------GCGGA- -5'
10786 5' -53.6 NC_002794.1 + 44522 0.82 0.276767
Target:  5'- --gGGCCcGUgUCCGCGAGCGCGCCg -3'
miRNA:   3'- gaaCUGGaUAgAGGCGUUCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 45023 0.67 0.963975
Target:  5'- -gUGGCCgggugCUCCGCAcccAGCGCGgUg -3'
miRNA:   3'- gaACUGGaua--GAGGCGU---UCGUGCgGa -5'
10786 5' -53.6 NC_002794.1 + 48334 0.67 0.960507
Target:  5'- --cGGCCcgGUaCUcCCGguGGUACGCCUg -3'
miRNA:   3'- gaaCUGGa-UA-GA-GGCguUCGUGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 48634 0.67 0.948739
Target:  5'- --cGGCC-GUCggggcCCGCGAGC-CGCCg -3'
miRNA:   3'- gaaCUGGaUAGa----GGCGUUCGuGCGGa -5'
10786 5' -53.6 NC_002794.1 + 48915 0.7 0.880185
Target:  5'- --gGGCCg--CUCCGCAGcGCcaGCGCCa -3'
miRNA:   3'- gaaCUGGauaGAGGCGUU-CG--UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 60218 0.68 0.92974
Target:  5'- --cGACCg--CgacgCCGcCGAGCGCGCCc -3'
miRNA:   3'- gaaCUGGauaGa---GGC-GUUCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 68686 0.73 0.712139
Target:  5'- -gUGGCCgccccaccccaGUCUCCGCGAGCugcuCGCCc -3'
miRNA:   3'- gaACUGGa----------UAGAGGCGUUCGu---GCGGa -5'
10786 5' -53.6 NC_002794.1 + 75934 0.66 0.978158
Target:  5'- --cGGCCUcagCUCCGCucucguGCcCGCCUu -3'
miRNA:   3'- gaaCUGGAua-GAGGCGuu----CGuGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 78375 0.66 0.975721
Target:  5'- --cGGCCUG-CUCCGCcAGCgACGgCg -3'
miRNA:   3'- gaaCUGGAUaGAGGCGuUCG-UGCgGa -5'
10786 5' -53.6 NC_002794.1 + 83671 1.08 0.006366
Target:  5'- uCUUGACCUAUCUCCGCAAGCACGCCUg -3'
miRNA:   3'- -GAACUGGAUAGAGGCGUUCGUGCGGA- -5'
10786 5' -53.6 NC_002794.1 + 90526 0.67 0.948739
Target:  5'- --cGGCgCUcGUCUCCGCGGGUgACGUCg -3'
miRNA:   3'- gaaCUG-GA-UAGAGGCGUUCG-UGCGGa -5'
10786 5' -53.6 NC_002794.1 + 91660 0.68 0.934851
Target:  5'- -cUGcACCUGUCggcgCaCGUggGCGCGCUg -3'
miRNA:   3'- gaAC-UGGAUAGa---G-GCGuuCGUGCGGa -5'
10786 5' -53.6 NC_002794.1 + 92904 0.67 0.963975
Target:  5'- --aGACCaagCUCUGCAAGCugucCGUCUg -3'
miRNA:   3'- gaaCUGGauaGAGGCGUUCGu---GCGGA- -5'
10786 5' -53.6 NC_002794.1 + 95074 0.77 0.479666
Target:  5'- -cUGACCUGUCUCCaGUgcuacgagGAGCugGCCg -3'
miRNA:   3'- gaACUGGAUAGAGG-CG--------UUCGugCGGa -5'
10786 5' -53.6 NC_002794.1 + 101117 0.67 0.952893
Target:  5'- --aGGCCg----CCGCcguGGCGCGCCUg -3'
miRNA:   3'- gaaCUGGauagaGGCGu--UCGUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.