Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10786 | 5' | -53.6 | NC_002794.1 | + | 106842 | 0.67 | 0.963975 |
Target: 5'- --cGGCCUGcggCUCCGCcuacaacaucGAGCucguCGCCUu -3' miRNA: 3'- gaaCUGGAUa--GAGGCG----------UUCGu---GCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 112987 | 0.67 | 0.952893 |
Target: 5'- gCUUGGCCUccugcagCUCCaggaGCGAGCGCaGCUUg -3' miRNA: 3'- -GAACUGGAua-----GAGG----CGUUCGUG-CGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 121632 | 0.69 | 0.918787 |
Target: 5'- --gGACgaGUCUCCGgGAGaACGCCg -3' miRNA: 3'- gaaCUGgaUAGAGGCgUUCgUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 122765 | 0.7 | 0.849926 |
Target: 5'- -cUGAUCgagcgCUCCGCGAGCG-GCCUc -3' miRNA: 3'- gaACUGGaua--GAGGCGUUCGUgCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 124827 | 0.66 | 0.967225 |
Target: 5'- --cGACCUGUCggcgaccaUCUGCAuggcGGC-CGCCg -3' miRNA: 3'- gaaCUGGAUAG--------AGGCGU----UCGuGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 131885 | 0.66 | 0.969967 |
Target: 5'- --cGGCCUcAUCUCggucgcgCGCGGGCACGUg- -3' miRNA: 3'- gaaCUGGA-UAGAG-------GCGUUCGUGCGga -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 140893 | 0.66 | 0.966273 |
Target: 5'- -cUGAcCCUGUCgaCCGCGuggcgggaccugcaGGCGCGCUg -3' miRNA: 3'- gaACU-GGAUAGa-GGCGU--------------UCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 142088 | 0.67 | 0.960507 |
Target: 5'- -gUGGCCggaAUUUCCGaaCAAGC-CGCCUc -3' miRNA: 3'- gaACUGGa--UAGAGGC--GUUCGuGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 144089 | 0.66 | 0.978158 |
Target: 5'- -gUGGCCUggcuGUC-CCGCuuGUGCGCCc -3' miRNA: 3'- gaACUGGA----UAGaGGCGuuCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 145383 | 0.67 | 0.948739 |
Target: 5'- --aGACg---CUCCGCucgguGGCGCGCCg -3' miRNA: 3'- gaaCUGgauaGAGGCGu----UCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 148576 | 0.66 | 0.975721 |
Target: 5'- --gGACUga--UCUGCGAGCACgGCCg -3' miRNA: 3'- gaaCUGGauagAGGCGUUCGUG-CGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 151778 | 0.66 | 0.967225 |
Target: 5'- --aGACCg--CgCCGCu-GCACGCCa -3' miRNA: 3'- gaaCUGGauaGaGGCGuuCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 153389 | 0.66 | 0.978158 |
Target: 5'- --cGAUCUGUCcgaUCGCGAGCugucgcgaGCGCCg -3' miRNA: 3'- gaaCUGGAUAGa--GGCGUUCG--------UGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 154373 | 0.66 | 0.980409 |
Target: 5'- --aGGCCgcggCggCgGCGGGCACGCCc -3' miRNA: 3'- gaaCUGGaua-Ga-GgCGUUCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 179187 | 0.71 | 0.841843 |
Target: 5'- --gGACCa----CCGCAGGCACGCCc -3' miRNA: 3'- gaaCUGGauagaGGCGUUCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 180788 | 0.71 | 0.807653 |
Target: 5'- -gUGGCCggggAUCUCCGUuuGAGCgACGUCUc -3' miRNA: 3'- gaACUGGa---UAGAGGCG--UUCG-UGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 183651 | 0.69 | 0.912947 |
Target: 5'- --gGGCCgccuUCUCCGCGccgGGCccgaGCGCCg -3' miRNA: 3'- gaaCUGGau--AGAGGCGU---UCG----UGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 185343 | 0.69 | 0.887203 |
Target: 5'- --cGACCgcUCgcgcgccgCCGCGAGCGgGCCg -3' miRNA: 3'- gaaCUGGauAGa-------GGCGUUCGUgCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 185449 | 0.66 | 0.967225 |
Target: 5'- --gGACagGUCUCCGCGAcaaACGCCg -3' miRNA: 3'- gaaCUGgaUAGAGGCGUUcg-UGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 185495 | 0.66 | 0.977206 |
Target: 5'- --gGACCgccuauauauucgAUCUCCGCGucGGCgucaugacGCGCCUc -3' miRNA: 3'- gaaCUGGa------------UAGAGGCGU--UCG--------UGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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