Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10786 | 5' | -53.6 | NC_002794.1 | + | 83671 | 1.08 | 0.006366 |
Target: 5'- uCUUGACCUAUCUCCGCAAGCACGCCUg -3' miRNA: 3'- -GAACUGGAUAGAGGCGUUCGUGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 151778 | 0.66 | 0.967225 |
Target: 5'- --aGACCg--CgCCGCu-GCACGCCa -3' miRNA: 3'- gaaCUGGauaGaGGCGuuCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 140893 | 0.66 | 0.966273 |
Target: 5'- -cUGAcCCUGUCgaCCGCGuggcgggaccugcaGGCGCGCUg -3' miRNA: 3'- gaACU-GGAUAGa-GGCGU--------------UCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 106842 | 0.67 | 0.963975 |
Target: 5'- --cGGCCUGcggCUCCGCcuacaacaucGAGCucguCGCCUu -3' miRNA: 3'- gaaCUGGAUa--GAGGCG----------UUCGu---GCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 92904 | 0.67 | 0.963975 |
Target: 5'- --aGACCaagCUCUGCAAGCugucCGUCUg -3' miRNA: 3'- gaaCUGGauaGAGGCGUUCGu---GCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 45023 | 0.67 | 0.963975 |
Target: 5'- -gUGGCCgggugCUCCGCAcccAGCGCGgUg -3' miRNA: 3'- gaACUGGaua--GAGGCGU---UCGUGCgGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 142088 | 0.67 | 0.960507 |
Target: 5'- -gUGGCCggaAUUUCCGaaCAAGC-CGCCUc -3' miRNA: 3'- gaACUGGa--UAGAGGC--GUUCGuGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 48334 | 0.67 | 0.960507 |
Target: 5'- --cGGCCcgGUaCUcCCGguGGUACGCCUg -3' miRNA: 3'- gaaCUGGa-UA-GA-GGCguUCGUGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 101117 | 0.67 | 0.952893 |
Target: 5'- --aGGCCg----CCGCcguGGCGCGCCUg -3' miRNA: 3'- gaaCUGGauagaGGCGu--UCGUGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 186304 | 0.67 | 0.963975 |
Target: 5'- --cGGCCgGUCgCCGCG-GCGCGCUc -3' miRNA: 3'- gaaCUGGaUAGaGGCGUuCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 124827 | 0.66 | 0.967225 |
Target: 5'- --cGACCUGUCggcgaccaUCUGCAuggcGGC-CGCCg -3' miRNA: 3'- gaaCUGGAUAG--------AGGCGU----UCGuGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 185449 | 0.66 | 0.967225 |
Target: 5'- --gGACagGUCUCCGCGAcaaACGCCg -3' miRNA: 3'- gaaCUGgaUAGAGGCGUUcg-UGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 32275 | 0.66 | 0.980409 |
Target: 5'- --cGGCCga--UCgGCGAGCgACGCCg -3' miRNA: 3'- gaaCUGGauagAGgCGUUCG-UGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 153389 | 0.66 | 0.978158 |
Target: 5'- --cGAUCUGUCcgaUCGCGAGCugucgcgaGCGCCg -3' miRNA: 3'- gaaCUGGAUAGa--GGCGUUCG--------UGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 144089 | 0.66 | 0.978158 |
Target: 5'- -gUGGCCUggcuGUC-CCGCuuGUGCGCCc -3' miRNA: 3'- gaACUGGA----UAGaGGCGuuCGUGCGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 75934 | 0.66 | 0.978158 |
Target: 5'- --cGGCCUcagCUCCGCucucguGCcCGCCUu -3' miRNA: 3'- gaaCUGGAua-GAGGCGuu----CGuGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 185495 | 0.66 | 0.977206 |
Target: 5'- --gGACCgccuauauauucgAUCUCCGCGucGGCgucaugacGCGCCUc -3' miRNA: 3'- gaaCUGGa------------UAGAGGCGU--UCG--------UGCGGA- -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 148576 | 0.66 | 0.975721 |
Target: 5'- --gGACUga--UCUGCGAGCACgGCCg -3' miRNA: 3'- gaaCUGGauagAGGCGUUCGUG-CGGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 78375 | 0.66 | 0.975721 |
Target: 5'- --cGGCCUG-CUCCGCcAGCgACGgCg -3' miRNA: 3'- gaaCUGGAUaGAGGCGuUCG-UGCgGa -5' |
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10786 | 5' | -53.6 | NC_002794.1 | + | 131885 | 0.66 | 0.969967 |
Target: 5'- --cGGCCUcAUCUCggucgcgCGCGGGCACGUg- -3' miRNA: 3'- gaaCUGGA-UAGAG-------GCGUUCGUGCGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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