miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 185753 0.66 0.881392
Target:  5'- cGCGu-CCaGcCGCCGGCGcggCCGCCCg -3'
miRNA:   3'- cCGUucGGcCaGUGGCCGUa--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 32261 0.66 0.881392
Target:  5'- uGGCGcucgacGGCCGGcCgAUCGGCGagcgacgCCGCCg -3'
miRNA:   3'- -CCGU------UCGGCCaG-UGGCCGUa------GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 53638 0.66 0.881392
Target:  5'- aGGUcGGCCGa--GCCGGCGuUCCGCa- -3'
miRNA:   3'- -CCGuUCGGCcagUGGCCGU-AGGUGgg -5'
10787 3' -58.7 NC_002794.1 + 36997 0.66 0.881392
Target:  5'- cGGCGAGgCGGaC-CCGGUAgagCgGCUCg -3'
miRNA:   3'- -CCGUUCgGCCaGuGGCCGUa--GgUGGG- -5'
10787 3' -58.7 NC_002794.1 + 183605 0.66 0.881392
Target:  5'- aGGgGGGCCGcGcgCgGCCGGCG-CC-CCCg -3'
miRNA:   3'- -CCgUUCGGC-Ca-G-UGGCCGUaGGuGGG- -5'
10787 3' -58.7 NC_002794.1 + 118884 0.66 0.881392
Target:  5'- uGCAGGUCGG-C-CCGGUGUUCGCg- -3'
miRNA:   3'- cCGUUCGGCCaGuGGCCGUAGGUGgg -5'
10787 3' -58.7 NC_002794.1 + 157005 0.66 0.881392
Target:  5'- aGCGGGCCcgcGGcCAgCCGGCuuAUUCGCUCg -3'
miRNA:   3'- cCGUUCGG---CCaGU-GGCCG--UAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 34751 0.66 0.881392
Target:  5'- cGCGacGGCgCGGUgggACgCGGCAcggCCGCCCg -3'
miRNA:   3'- cCGU--UCG-GCCAg--UG-GCCGUa--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 125397 0.66 0.881392
Target:  5'- cGcCGAGCCcGUCGa-GGCG-CCGCCCa -3'
miRNA:   3'- cC-GUUCGGcCAGUggCCGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189896 0.66 0.881392
Target:  5'- gGGCccGCCGucagcGcCGCCGcGCGaCCGCCCg -3'
miRNA:   3'- -CCGuuCGGC-----CaGUGGC-CGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 62337 0.66 0.881392
Target:  5'- uGGCgGAGCCcG-CGCCGGCG--CACCUg -3'
miRNA:   3'- -CCG-UUCGGcCaGUGGCCGUagGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 59262 0.66 0.881392
Target:  5'- cGGCGAGCaCGcG-CGCCuGCuggagAUCCGCUCg -3'
miRNA:   3'- -CCGUUCG-GC-CaGUGGcCG-----UAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 143025 0.66 0.881392
Target:  5'- cGGUcGGCCgGGUCGaCGuGCAgggCCGCCa -3'
miRNA:   3'- -CCGuUCGG-CCAGUgGC-CGUa--GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 186648 0.66 0.87936
Target:  5'- cGCGGGUCGGcCGCgcgcaccccguacaCGGCGcCCGCCa -3'
miRNA:   3'- cCGUUCGGCCaGUG--------------GCCGUaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 8122 0.66 0.874547
Target:  5'- gGGCGgcGGCCuccucGGUgACCGGCGaCgGCaCCg -3'
miRNA:   3'- -CCGU--UCGG-----CCAgUGGCCGUaGgUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 14019 0.66 0.874547
Target:  5'- cGGCAAguGCUGGUCcuacuggcuGCUGGCgAUCCuuACgCCg -3'
miRNA:   3'- -CCGUU--CGGCCAG---------UGGCCG-UAGG--UG-GG- -5'
10787 3' -58.7 NC_002794.1 + 188675 0.66 0.874547
Target:  5'- aGGCGAagucGUCGGcCACgCGGUAcagCuCGCCCg -3'
miRNA:   3'- -CCGUU----CGGCCaGUG-GCCGUa--G-GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 125590 0.66 0.874547
Target:  5'- aGCGaggAGUCGGUCACCuucgaguucGUGUCCAaCCCc -3'
miRNA:   3'- cCGU---UCGGCCAGUGGc--------CGUAGGU-GGG- -5'
10787 3' -58.7 NC_002794.1 + 16521 0.66 0.874547
Target:  5'- cGGCGucGCCaccgccGUCcCCGGCGUCC-CCg -3'
miRNA:   3'- -CCGUu-CGGc-----CAGuGGCCGUAGGuGGg -5'
10787 3' -58.7 NC_002794.1 + 2265 0.66 0.874547
Target:  5'- aGGCGAccGCCGGcCcuuauacgggaGCCGGggcgugucaUAUCCACCUc -3'
miRNA:   3'- -CCGUU--CGGCCaG-----------UGGCC---------GUAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.