miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 83432 1.14 0.001065
Target:  5'- cGGCAAGCCGGUCACCGGCAUCCACCCg -3'
miRNA:   3'- -CCGUUCGGCCAGUGGCCGUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 19380 0.85 0.099386
Target:  5'- gGGCGGGCCGGUCACCccuCAgCCACCCa -3'
miRNA:   3'- -CCGUUCGGCCAGUGGcc-GUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 62502 0.83 0.137621
Target:  5'- cGGCGGGCgGcGcCGCCGGCGccUCCGCCCa -3'
miRNA:   3'- -CCGUUCGgC-CaGUGGCCGU--AGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 67716 0.82 0.151878
Target:  5'- cGGCAacaggGGCuCGGUC-CCGGCGgcggCCACCCg -3'
miRNA:   3'- -CCGU-----UCG-GCCAGuGGCCGUa---GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 141304 0.8 0.188948
Target:  5'- uGGCGcGCCGGcgacggCACCGGCGUCgGCUCg -3'
miRNA:   3'- -CCGUuCGGCCa-----GUGGCCGUAGgUGGG- -5'
10787 3' -58.7 NC_002794.1 + 137392 0.8 0.198201
Target:  5'- cGCGGGuCCGGUCuguCCGGCGUCCGCg- -3'
miRNA:   3'- cCGUUC-GGCCAGu--GGCCGUAGGUGgg -5'
10787 3' -58.7 NC_002794.1 + 192826 0.8 0.198201
Target:  5'- -aCAGGCCGGUCGCCaGGUAgUCGCCCa -3'
miRNA:   3'- ccGUUCGGCCAGUGG-CCGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 2486 0.78 0.250552
Target:  5'- gGGCGAuCCGGUgGCCGGgGUCCagACCCc -3'
miRNA:   3'- -CCGUUcGGCCAgUGGCCgUAGG--UGGG- -5'
10787 3' -58.7 NC_002794.1 + 50341 0.78 0.250552
Target:  5'- --uGGGCuCGGUCACCGGC-UCCGCCa -3'
miRNA:   3'- ccgUUCG-GCCAGUGGCCGuAGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 48581 0.78 0.262303
Target:  5'- gGGCGAGCCGGaggagcggcgcgUCGCCgucGGCGUCgGCCUc -3'
miRNA:   3'- -CCGUUCGGCC------------AGUGG---CCGUAGgUGGG- -5'
10787 3' -58.7 NC_002794.1 + 125743 0.78 0.262303
Target:  5'- aGGCGGGCCGcGggacggcgGCCGGCGgcucgCCACCCg -3'
miRNA:   3'- -CCGUUCGGC-Cag------UGGCCGUa----GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 94014 0.77 0.320745
Target:  5'- cGGCGGGCCGGcggguucCGCCGGCGg--GCCCg -3'
miRNA:   3'- -CCGUUCGGCCa------GUGGCCGUaggUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189573 0.77 0.320745
Target:  5'- cGGUcGGCCGGcCcggGCCGGCGccccuuagcccgUCCGCCCg -3'
miRNA:   3'- -CCGuUCGGCCaG---UGGCCGU------------AGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 60632 0.77 0.320745
Target:  5'- gGGCGGacCCGG-CGCCGGCGgcgccggCCACCCg -3'
miRNA:   3'- -CCGUUc-GGCCaGUGGCCGUa------GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 144986 0.77 0.320745
Target:  5'- cGCGA-CCGG-CGCCgGGCGUCCGCCUg -3'
miRNA:   3'- cCGUUcGGCCaGUGG-CCGUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 38500 0.76 0.327809
Target:  5'- cGGCGGcGCCGGUCGCCGccGCcUCCGcgauCCCa -3'
miRNA:   3'- -CCGUU-CGGCCAGUGGC--CGuAGGU----GGG- -5'
10787 3' -58.7 NC_002794.1 + 194607 0.76 0.333543
Target:  5'- cGCAAGCCGGUacguguaCACCGcGCAcgccuggUCCACCa -3'
miRNA:   3'- cCGUUCGGCCA-------GUGGC-CGU-------AGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 11374 0.76 0.342281
Target:  5'- cGGCAaaAGCCGGccucgacccaCGCCGGCuacaCCACCCc -3'
miRNA:   3'- -CCGU--UCGGCCa---------GUGGCCGua--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 111993 0.76 0.342281
Target:  5'- cGGCAcgcccuGCgCGGUCACCagucGGCG-CCGCCCg -3'
miRNA:   3'- -CCGUu-----CG-GCCAGUGG----CCGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 136714 0.75 0.364841
Target:  5'- uGCAGgcGCCGGUC-CCGGCGUCCAg-- -3'
miRNA:   3'- cCGUU--CGGCCAGuGGCCGUAGGUggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.