miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 71096 0.75 0.380441
Target:  5'- ---cAGCCGGUCGCCGGCggCCugGCCg -3'
miRNA:   3'- ccguUCGGCCAGUGGCCGuaGG--UGGg -5'
10787 3' -58.7 NC_002794.1 + 69811 0.75 0.380441
Target:  5'- aGCccGCCGccgCgACCGGCGUCCGCCCg -3'
miRNA:   3'- cCGuuCGGCca-G-UGGCCGUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 180665 0.75 0.404664
Target:  5'- gGGCGuGCCGGggaacUCGCCGGCcgCUcccggcGCCCg -3'
miRNA:   3'- -CCGUuCGGCC-----AGUGGCCGuaGG------UGGG- -5'
10787 3' -58.7 NC_002794.1 + 54992 0.75 0.404664
Target:  5'- cGGCGAcGgCGGcgacUCGCCgGGCGUCCGCCg -3'
miRNA:   3'- -CCGUU-CgGCC----AGUGG-CCGUAGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 116908 0.75 0.404664
Target:  5'- cGGC-GGCCGGU--CCGGCGUCgGCuCCg -3'
miRNA:   3'- -CCGuUCGGCCAguGGCCGUAGgUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 71966 0.74 0.412952
Target:  5'- cGGCGcaucAGCCGGUC-CCGGCGgagCCggaGCCg -3'
miRNA:   3'- -CCGU----UCGGCCAGuGGCCGUa--GG---UGGg -5'
10787 3' -58.7 NC_002794.1 + 68975 0.74 0.412952
Target:  5'- cGCGGGCCGcGaCGCCGGCGUCgACgCu -3'
miRNA:   3'- cCGUUCGGC-CaGUGGCCGUAGgUGgG- -5'
10787 3' -58.7 NC_002794.1 + 49606 0.74 0.421343
Target:  5'- cGGCGacGGCgGG-CGCCGGCGgcgCCucGCCCg -3'
miRNA:   3'- -CCGU--UCGgCCaGUGGCCGUa--GG--UGGG- -5'
10787 3' -58.7 NC_002794.1 + 138191 0.74 0.421343
Target:  5'- cGGCcAGCCGGUCcacguccaCGGCuUCCGuCCCg -3'
miRNA:   3'- -CCGuUCGGCCAGug------GCCGuAGGU-GGG- -5'
10787 3' -58.7 NC_002794.1 + 183438 0.74 0.429837
Target:  5'- aGCGGGaCCGGcgcccgccacCGCCGGCGcCCGCCCg -3'
miRNA:   3'- cCGUUC-GGCCa---------GUGGCCGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 40587 0.74 0.433262
Target:  5'- cGCGGGCCcucuccuccgagucGUCGCCGGCGUCCGacUCCg -3'
miRNA:   3'- cCGUUCGGc-------------CAGUGGCCGUAGGU--GGG- -5'
10787 3' -58.7 NC_002794.1 + 57985 0.74 0.433262
Target:  5'- cGGCGAGCCGacgcgccaggccuucGUCGCCgccggGGCcgCCGCCg -3'
miRNA:   3'- -CCGUUCGGC---------------CAGUGG-----CCGuaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 51265 0.74 0.43843
Target:  5'- gGGCGGGCCGGgagGCaGGCGcggcCCGCCCg -3'
miRNA:   3'- -CCGUUCGGCCag-UGgCCGUa---GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 66568 0.73 0.464785
Target:  5'- cGGUAucGCCGG-CGCCGGCGgcaGCCCc -3'
miRNA:   3'- -CCGUu-CGGCCaGUGGCCGUaggUGGG- -5'
10787 3' -58.7 NC_002794.1 + 156198 0.73 0.473752
Target:  5'- cGGagucGCCGGUCggaggGCCGGCGacUCCGCCg -3'
miRNA:   3'- -CCguu-CGGCCAG-----UGGCCGU--AGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 68942 0.73 0.473752
Target:  5'- cGCGGGCCGcGgCGCCGGCG-CCucuCCCu -3'
miRNA:   3'- cCGUUCGGC-CaGUGGCCGUaGGu--GGG- -5'
10787 3' -58.7 NC_002794.1 + 116984 0.73 0.473752
Target:  5'- aGCAGGUCGuUCGCCguccgcGGCGUCuCGCCCa -3'
miRNA:   3'- cCGUUCGGCcAGUGG------CCGUAG-GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 43047 0.73 0.473752
Target:  5'- cGGCAGGCCGa--GCCGGC---CACCCg -3'
miRNA:   3'- -CCGUUCGGCcagUGGCCGuagGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 61822 0.73 0.473752
Target:  5'- cGGCGGccGCCGGcgGCCGGCGucacUCCGCuCCg -3'
miRNA:   3'- -CCGUU--CGGCCagUGGCCGU----AGGUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 19331 0.73 0.481896
Target:  5'- uGGCGAcccgcgcGCCGGUCACCcccUcgCCGCCCg -3'
miRNA:   3'- -CCGUU-------CGGCCAGUGGcc-GuaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.