miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 42696 0.66 0.872454
Target:  5'- cGGCGAGCC---CGCCugaaacaacgugugGGCGUCCACguCCa -3'
miRNA:   3'- -CCGUUCGGccaGUGG--------------CCGUAGGUG--GG- -5'
10787 3' -58.7 NC_002794.1 + 142893 0.66 0.867502
Target:  5'- cGGCAGGCgug-C-CCGGCGUCC-UCCg -3'
miRNA:   3'- -CCGUUCGgccaGuGGCCGUAGGuGGG- -5'
10787 3' -58.7 NC_002794.1 + 112549 0.66 0.867502
Target:  5'- cGGU-AGCgGGgcUCGCCGcCggCCACCCg -3'
miRNA:   3'- -CCGuUCGgCC--AGUGGCcGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 111127 0.66 0.867502
Target:  5'- cGGC--GCCGGcgGCCGGUGcUCCACgCg -3'
miRNA:   3'- -CCGuuCGGCCagUGGCCGU-AGGUGgG- -5'
10787 3' -58.7 NC_002794.1 + 74079 0.66 0.867502
Target:  5'- cGGCccuccucgccGAGUCGGgacagCugCGGCugcUCACCCu -3'
miRNA:   3'- -CCG----------UUCGGCCa----GugGCCGua-GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 101596 0.66 0.867502
Target:  5'- gGGgGGGCgGGU-GCCGGC--CCGCCg -3'
miRNA:   3'- -CCgUUCGgCCAgUGGCCGuaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 14773 0.66 0.867502
Target:  5'- aGGCcgcugAGGCCGGcgagGCCGGCGUgaCCGCgaCCa -3'
miRNA:   3'- -CCG-----UUCGGCCag--UGGCCGUA--GGUG--GG- -5'
10787 3' -58.7 NC_002794.1 + 121220 0.66 0.867502
Target:  5'- gGGC-GGCCGccgccgcuacaGUCGCCGcuGCcgCCGCCg -3'
miRNA:   3'- -CCGuUCGGC-----------CAGUGGC--CGuaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 116677 0.66 0.867502
Target:  5'- cGGCGAGCgugucgaucCGGgaGCCGGCcUCCAgcaCCg -3'
miRNA:   3'- -CCGUUCG---------GCCagUGGCCGuAGGUg--GG- -5'
10787 3' -58.7 NC_002794.1 + 188788 0.66 0.867502
Target:  5'- cGGUAgcGGCCGGcccCGCCGaGCG-CCGUCCa -3'
miRNA:   3'- -CCGU--UCGGCCa--GUGGC-CGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189373 0.66 0.867502
Target:  5'- aGGCuGAGCCGcUCGCCgcugugcucGGCcacguaGUCCGCCa -3'
miRNA:   3'- -CCG-UUCGGCcAGUGG---------CCG------UAGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 193753 0.66 0.867502
Target:  5'- cGGCGAGCgac-CGCCGGCc-CCGCUCg -3'
miRNA:   3'- -CCGUUCGgccaGUGGCCGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 81398 0.66 0.867502
Target:  5'- uGGCu--CCGGUC-CCGGCucgggagcugCuCGCCCg -3'
miRNA:   3'- -CCGuucGGCCAGuGGCCGua--------G-GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 86698 0.66 0.867502
Target:  5'- -cCGAGcCCGGUCGCuCGuCGaagCCGCCCg -3'
miRNA:   3'- ccGUUC-GGCCAGUG-GCcGUa--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 156834 0.66 0.867502
Target:  5'- aGGCAccgaccgggGGUCGGU-GCCGcGCGUucCCGCUCg -3'
miRNA:   3'- -CCGU---------UCGGCCAgUGGC-CGUA--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 55034 0.66 0.866787
Target:  5'- cGCGAGCaCGGcguUCACCGagaaauccagcgcGCcgUCGCCCc -3'
miRNA:   3'- cCGUUCG-GCC---AGUGGC-------------CGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 124896 0.66 0.866787
Target:  5'- cGGCcagGAGCUGGUCcgcgagACCGGCgaGUCCucggugcgcguggACCUc -3'
miRNA:   3'- -CCG---UUCGGCCAG------UGGCCG--UAGG-------------UGGG- -5'
10787 3' -58.7 NC_002794.1 + 146002 0.66 0.864629
Target:  5'- cGGCc-GCCGGg-GCCGGagacgccgucccaGUCCGCUCg -3'
miRNA:   3'- -CCGuuCGGCCagUGGCCg------------UAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 16704 0.66 0.863182
Target:  5'- cGCGAGUCGcucgccguccgaggaGUCugcGCCGGC-UCCGuCCCa -3'
miRNA:   3'- cCGUUCGGC---------------CAG---UGGCCGuAGGU-GGG- -5'
10787 3' -58.7 NC_002794.1 + 103690 0.66 0.862455
Target:  5'- gGGCAGcgagauggccuccuuGCCGGUgAUgGGCAUCUucaugagGCUCa -3'
miRNA:   3'- -CCGUU---------------CGGCCAgUGgCCGUAGG-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.