miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 63709 0.66 0.860263
Target:  5'- cGGC--GCCGGcgcCGCCGGaccgccgAUCCaACCCa -3'
miRNA:   3'- -CCGuuCGGCCa--GUGGCCg------UAGG-UGGG- -5'
10787 3' -58.7 NC_002794.1 + 34339 0.66 0.860263
Target:  5'- aGGCGacGGCCG--CGCCGu--UCCGCCCg -3'
miRNA:   3'- -CCGU--UCGGCcaGUGGCcguAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 103929 0.66 0.860263
Target:  5'- cGGCGAGCagcgCGCgUGGCcgCCGCCg -3'
miRNA:   3'- -CCGUUCGgccaGUG-GCCGuaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 85453 0.66 0.860263
Target:  5'- cGCGacaacaacauGGCCGG-CGcCCGGCcUCCGgCCu -3'
miRNA:   3'- cCGU----------UCGGCCaGU-GGCCGuAGGUgGG- -5'
10787 3' -58.7 NC_002794.1 + 63331 0.66 0.860263
Target:  5'- gGGCccGAGCgCGG--ACCGGUcgCuCGCCCu -3'
miRNA:   3'- -CCG--UUCG-GCCagUGGCCGuaG-GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 22914 0.66 0.860263
Target:  5'- cGGCGaccgcGGCCGccaaACCGGCAcCCAUCg -3'
miRNA:   3'- -CCGU-----UCGGCcag-UGGCCGUaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 96724 0.66 0.860263
Target:  5'- cGGcCGAGCCGGcgacgacCGCCGGCG-CguCUCg -3'
miRNA:   3'- -CC-GUUCGGCCa------GUGGCCGUaGguGGG- -5'
10787 3' -58.7 NC_002794.1 + 193932 0.66 0.860263
Target:  5'- cGGCcaccGCCGG-CuCCGGCcccgCCGCCa -3'
miRNA:   3'- -CCGuu--CGGCCaGuGGCCGua--GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 27627 0.66 0.859529
Target:  5'- cGGCcGGUCGGUCaagcgaucagucgACCGGU-UCCgACUCg -3'
miRNA:   3'- -CCGuUCGGCCAG-------------UGGCCGuAGG-UGGG- -5'
10787 3' -58.7 NC_002794.1 + 83032 0.66 0.858792
Target:  5'- cGGC--GCCGGgcggCACCcacGGCGgaggacgagcgcCCACCCa -3'
miRNA:   3'- -CCGuuCGGCCa---GUGG---CCGUa-----------GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 104816 0.66 0.858054
Target:  5'- uGGcCAGGUCGGUCAgCGGaguauuaaaaaacaCGUUCguGCCCg -3'
miRNA:   3'- -CC-GUUCGGCCAGUgGCC--------------GUAGG--UGGG- -5'
10787 3' -58.7 NC_002794.1 + 71238 0.66 0.858054
Target:  5'- uGGC-GGCCGGcguggACCGGCAcguagaacuugaggUCCGCgCg -3'
miRNA:   3'- -CCGuUCGGCCag---UGGCCGU--------------AGGUGgG- -5'
10787 3' -58.7 NC_002794.1 + 119516 0.66 0.858054
Target:  5'- cGGCGcggAGCCGGcCGCggaccccucguccgCGGCcgUCGCCg -3'
miRNA:   3'- -CCGU---UCGGCCaGUG--------------GCCGuaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 50809 0.66 0.852834
Target:  5'- cGGC--GUCGGgcgCuCCGGCGcccCCGCCCu -3'
miRNA:   3'- -CCGuuCGGCCa--GuGGCCGUa--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 44721 0.66 0.852834
Target:  5'- cGGCGAcGUCGG---CCGGCG-CCGCCg -3'
miRNA:   3'- -CCGUU-CGGCCaguGGCCGUaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 2609 0.66 0.852834
Target:  5'- uGGCAccuacCCGGcCGCCGGCGcgCguCCCc -3'
miRNA:   3'- -CCGUuc---GGCCaGUGGCCGUa-GguGGG- -5'
10787 3' -58.7 NC_002794.1 + 104888 0.66 0.852834
Target:  5'- aGCGGGCCGGcCGCgaGGCGccgugCUGCUCg -3'
miRNA:   3'- cCGUUCGGCCaGUGg-CCGUa----GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 65252 0.66 0.852834
Target:  5'- cGGCGAuCCGGccUCGCCGaGCGgcggcgccUCCucGCCCc -3'
miRNA:   3'- -CCGUUcGGCC--AGUGGC-CGU--------AGG--UGGG- -5'
10787 3' -58.7 NC_002794.1 + 72216 0.66 0.852834
Target:  5'- gGGCGcuGUCGGaagaacacgaUgGCCGGCAcgaUCCGCCa -3'
miRNA:   3'- -CCGUu-CGGCC----------AgUGGCCGU---AGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 123873 0.66 0.852834
Target:  5'- cGcCGAGCgGGUCcaGCUGcuGCGUuCCGCCCg -3'
miRNA:   3'- cC-GUUCGgCCAG--UGGC--CGUA-GGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.