miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 295 0.68 0.769521
Target:  5'- uGGCGcGCCGaaCGCCGGgc-CCGCCCc -3'
miRNA:   3'- -CCGUuCGGCcaGUGGCCguaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 369 0.67 0.813059
Target:  5'- cGGCAaacGGCCGcGcgaUCcCCGGCAcgcugCCACCg -3'
miRNA:   3'- -CCGU---UCGGC-C---AGuGGCCGUa----GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 824 0.66 0.852081
Target:  5'- gGGCcuuuuccuCCGGUCcCCGGCGcgugcguUCgGCCCa -3'
miRNA:   3'- -CCGuuc-----GGCCAGuGGCCGU-------AGgUGGG- -5'
10787 3' -58.7 NC_002794.1 + 2265 0.66 0.874547
Target:  5'- aGGCGAccGCCGGcCcuuauacgggaGCCGGggcgugucaUAUCCACCUc -3'
miRNA:   3'- -CCGUU--CGGCCaG-----------UGGCC---------GUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 2486 0.78 0.250552
Target:  5'- gGGCGAuCCGGUgGCCGGgGUCCagACCCc -3'
miRNA:   3'- -CCGUUcGGCCAgUGGCCgUAGG--UGGG- -5'
10787 3' -58.7 NC_002794.1 + 2609 0.66 0.852834
Target:  5'- uGGCAccuacCCGGcCGCCGGCGcgCguCCCc -3'
miRNA:   3'- -CCGUuc---GGCCaGUGGCCGUa-GguGGG- -5'
10787 3' -58.7 NC_002794.1 + 5411 0.7 0.675029
Target:  5'- -cCGAGCCaGUCucaACCGGaagaccuGUCCACCCg -3'
miRNA:   3'- ccGUUCGGcCAG---UGGCCg------UAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 8122 0.66 0.874547
Target:  5'- gGGCGgcGGCCuccucGGUgACCGGCGaCgGCaCCg -3'
miRNA:   3'- -CCGU--UCGG-----CCAgUGGCCGUaGgUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 11374 0.76 0.342281
Target:  5'- cGGCAaaAGCCGGccucgacccaCGCCGGCuacaCCACCCc -3'
miRNA:   3'- -CCGU--UCGGCCa---------GUGGCCGua--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 11537 0.67 0.804624
Target:  5'- gGGCGaccgaggaccgcGGCUGGUCGCUagaaugucaggGGCAacuggUCUGCCCc -3'
miRNA:   3'- -CCGU------------UCGGCCAGUGG-----------CCGU-----AGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 12020 0.67 0.813059
Target:  5'- uGCGccGCCGGcC-CgGGCGUCCGCgCCu -3'
miRNA:   3'- cCGUu-CGGCCaGuGgCCGUAGGUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 12219 0.72 0.548273
Target:  5'- cGGCGGcGUCGGcggCGCCGGCGgcgCCGUCCg -3'
miRNA:   3'- -CCGUU-CGGCCa--GUGGCCGUa--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 13871 0.67 0.804624
Target:  5'- cGCGAcCCGGUUcuCCGaGCG-CCGCCCu -3'
miRNA:   3'- cCGUUcGGCCAGu-GGC-CGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 14019 0.66 0.874547
Target:  5'- cGGCAAguGCUGGUCcuacuggcuGCUGGCgAUCCuuACgCCg -3'
miRNA:   3'- -CCGUU--CGGCCAG---------UGGCCG-UAGG--UG-GG- -5'
10787 3' -58.7 NC_002794.1 + 14570 0.67 0.796044
Target:  5'- aGGCGAGCCGGcCgACCgaagcgggccguGGCGagCGCgCCg -3'
miRNA:   3'- -CCGUUCGGCCaG-UGG------------CCGUagGUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 14773 0.66 0.867502
Target:  5'- aGGCcgcugAGGCCGGcgagGCCGGCGUgaCCGCgaCCa -3'
miRNA:   3'- -CCG-----UUCGGCCag--UGGCCGUA--GGUG--GG- -5'
10787 3' -58.7 NC_002794.1 + 15176 0.67 0.829471
Target:  5'- gGGCcguucGCCGGagACCGGgugaaCGaCCGCCCg -3'
miRNA:   3'- -CCGuu---CGGCCagUGGCC-----GUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 16226 0.71 0.616263
Target:  5'- cGGCGGGUCaGGUCggGCUGGCAcguccCCGCCg -3'
miRNA:   3'- -CCGUUCGG-CCAG--UGGCCGUa----GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 16314 0.7 0.676003
Target:  5'- cGGCcGGCUGGaUCccccugccccugGCCGGCAccgacgacgucggcgCCACCCg -3'
miRNA:   3'- -CCGuUCGGCC-AG------------UGGCCGUa--------------GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 16521 0.66 0.874547
Target:  5'- cGGCGucGCCaccgccGUCcCCGGCGUCC-CCg -3'
miRNA:   3'- -CCGUu-CGGc-----CAGuGGCCGUAGGuGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.