miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 16587 0.68 0.769521
Target:  5'- cGCc-GCCGccGUCuCCGGCGUcgCCACCCc -3'
miRNA:   3'- cCGuuCGGC--CAGuGGCCGUA--GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 16704 0.66 0.863182
Target:  5'- cGCGAGUCGcucgccguccgaggaGUCugcGCCGGC-UCCGuCCCa -3'
miRNA:   3'- cCGUUCGGC---------------CAG---UGGCCGuAGGU-GGG- -5'
10787 3' -58.7 NC_002794.1 + 17129 0.67 0.837432
Target:  5'- cGGUcgAAGCCGG-CGaaaCGGCGguagCGCCCg -3'
miRNA:   3'- -CCG--UUCGGCCaGUg--GCCGUag--GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 17259 0.69 0.713658
Target:  5'- cGGCGAcCCGGcucgUCACCcgGGCAcgCCGCCg -3'
miRNA:   3'- -CCGUUcGGCC----AGUGG--CCGUa-GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 17315 0.7 0.665272
Target:  5'- cGGUGAcGaCGGUCaggccGCCGGCGUCCccuccgACCCa -3'
miRNA:   3'- -CCGUU-CgGCCAG-----UGGCCGUAGG------UGGG- -5'
10787 3' -58.7 NC_002794.1 + 17632 0.66 0.852081
Target:  5'- cGGCGAGCgaucccgccgccgCGGcCGCCGccaccGCcgCCACCg -3'
miRNA:   3'- -CCGUUCG-------------GCCaGUGGC-----CGuaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 17917 0.73 0.482805
Target:  5'- cGGCAgcucaccaccGGCCGGcUCcccgACCuGGCggCCACCCg -3'
miRNA:   3'- -CCGU----------UCGGCC-AG----UGG-CCGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 19331 0.73 0.481896
Target:  5'- uGGCGAcccgcgcGCCGGUCACCcccUcgCCGCCCg -3'
miRNA:   3'- -CCGUU-------CGGCCAGUGGcc-GuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 19380 0.85 0.099386
Target:  5'- gGGCGGGCCGGUCACCccuCAgCCACCCa -3'
miRNA:   3'- -CCGUUCGGCCAGUGGcc-GUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 19473 0.7 0.675029
Target:  5'- cGGCGGgacccGCCGGUCGCCcgcaccgacgacGGCGgaggucgcgCCGCUCg -3'
miRNA:   3'- -CCGUU-----CGGCCAGUGG------------CCGUa--------GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 19532 0.69 0.694439
Target:  5'- cGGCGcGGCgCGGccCGCCGGUGUCgGaCCCg -3'
miRNA:   3'- -CCGU-UCG-GCCa-GUGGCCGUAGgU-GGG- -5'
10787 3' -58.7 NC_002794.1 + 20802 0.7 0.665272
Target:  5'- gGGCAAGCUGG-CGCaagagaaGGaauaccugAUCCACCCc -3'
miRNA:   3'- -CCGUUCGGCCaGUGg------CCg-------UAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 21663 0.71 0.606466
Target:  5'- cGGCGGuGgCGG-CGgCGGUAUUCGCCCg -3'
miRNA:   3'- -CCGUU-CgGCCaGUgGCCGUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 22002 0.7 0.65549
Target:  5'- cGGCAAGCCGGcCAa-GGCGUgCgaaACCUg -3'
miRNA:   3'- -CCGUUCGGCCaGUggCCGUAgG---UGGG- -5'
10787 3' -58.7 NC_002794.1 + 22914 0.66 0.860263
Target:  5'- cGGCGaccgcGGCCGccaaACCGGCAcCCAUCg -3'
miRNA:   3'- -CCGU-----UCGGCcag-UGGCCGUaGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 22949 0.67 0.813059
Target:  5'- uGGCcgacGGGCCGG-CGCCGuuGUCC-CCUu -3'
miRNA:   3'- -CCG----UUCGGCCaGUGGCcgUAGGuGGG- -5'
10787 3' -58.7 NC_002794.1 + 23781 0.67 0.836644
Target:  5'- aGCGAGCgaucGUCACCauuuauaaGGCAaucggccgcaaucUCCACCCa -3'
miRNA:   3'- cCGUUCGgc--CAGUGG--------CCGU-------------AGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 23976 0.66 0.845222
Target:  5'- cGGCgAGGCCGGcgcCACCGucGC-UCCGUCCg -3'
miRNA:   3'- -CCG-UUCGGCCa--GUGGC--CGuAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 24033 0.69 0.704076
Target:  5'- cGGCGAcGgCGGUC-CCucccCGUCCGCCCg -3'
miRNA:   3'- -CCGUU-CgGCCAGuGGcc--GUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 24210 0.68 0.741986
Target:  5'- cGGCGGcCCGcUCACCcGUguccGUCCACCCa -3'
miRNA:   3'- -CCGUUcGGCcAGUGGcCG----UAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.