miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 3' -58.7 NC_002794.1 + 195588 0.68 0.764088
Target:  5'- cGCcGGaCCGGccgacgcgcccccgCGCUGGCGUCCgGCCCa -3'
miRNA:   3'- cCGuUC-GGCCa-------------GUGGCCGUAGG-UGGG- -5'
10787 3' -58.7 NC_002794.1 + 195225 0.68 0.760445
Target:  5'- cGGCAgcAGCCcgcgcggcGUCACCaGCAccgaCCACCCc -3'
miRNA:   3'- -CCGU--UCGGc-------CAGUGGcCGUa---GGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 194607 0.76 0.333543
Target:  5'- cGCAAGCCGGUacguguaCACCGcGCAcgccuggUCCACCa -3'
miRNA:   3'- cCGUUCGGCCA-------GUGGC-CGU-------AGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 194019 0.68 0.787329
Target:  5'- cGGCc-GCCGc-CGCCGGCGcCuCGCCCg -3'
miRNA:   3'- -CCGuuCGGCcaGUGGCCGUaG-GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 193932 0.66 0.860263
Target:  5'- cGGCcaccGCCGG-CuCCGGCcccgCCGCCa -3'
miRNA:   3'- -CCGuu--CGGCCaGuGGCCGua--GGUGGg -5'
10787 3' -58.7 NC_002794.1 + 193753 0.66 0.867502
Target:  5'- cGGCGAGCgac-CGCCGGCc-CCGCUCg -3'
miRNA:   3'- -CCGUUCGgccaGUGGCCGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 193375 0.66 0.845222
Target:  5'- -aCGGGCCGcGcuccUCGCCGuCGUCCGCCUc -3'
miRNA:   3'- ccGUUCGGC-C----AGUGGCcGUAGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 193283 0.67 0.796044
Target:  5'- cGGCGugcGCCGGuagUCGCCGuccGC-UCCGCgCCg -3'
miRNA:   3'- -CCGUu--CGGCC---AGUGGC---CGuAGGUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 192826 0.8 0.198201
Target:  5'- -aCAGGCCGGUCGCCaGGUAgUCGCCCa -3'
miRNA:   3'- ccGUUCGGCCAGUGG-CCGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 192739 0.72 0.567519
Target:  5'- cGGCcAGCCGGUaCACCucGCGcuccUCCACgCCg -3'
miRNA:   3'- -CCGuUCGGCCA-GUGGc-CGU----AGGUG-GG- -5'
10787 3' -58.7 NC_002794.1 + 191513 0.67 0.837432
Target:  5'- aGGU--GCCaG-CGCCgGGCGUCgGCCCg -3'
miRNA:   3'- -CCGuuCGGcCaGUGG-CCGUAGgUGGG- -5'
10787 3' -58.7 NC_002794.1 + 191368 0.71 0.586933
Target:  5'- gGGaCGGGCCGGacccuccgCGCCcGCggCCGCCCa -3'
miRNA:   3'- -CC-GUUCGGCCa-------GUGGcCGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189896 0.66 0.881392
Target:  5'- gGGCccGCCGucagcGcCGCCGcGCGaCCGCCCg -3'
miRNA:   3'- -CCGuuCGGC-----CaGUGGC-CGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189649 0.7 0.65549
Target:  5'- uGGCugacuAGCCGGcUgGCCGaGCggUCGCCCc -3'
miRNA:   3'- -CCGu----UCGGCC-AgUGGC-CGuaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189573 0.77 0.320745
Target:  5'- cGGUcGGCCGGcCcggGCCGGCGccccuuagcccgUCCGCCCg -3'
miRNA:   3'- -CCGuUCGGCCaG---UGGCCGU------------AGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 189373 0.66 0.867502
Target:  5'- aGGCuGAGCCGcUCGCCgcugugcucGGCcacguaGUCCGCCa -3'
miRNA:   3'- -CCG-UUCGGCcAGUGG---------CCG------UAGGUGGg -5'
10787 3' -58.7 NC_002794.1 + 189048 0.69 0.723175
Target:  5'- cGGCGGGCUGcgcGUCGCguaCGGCGUCUcggGCCg -3'
miRNA:   3'- -CCGUUCGGC---CAGUG---GCCGUAGG---UGGg -5'
10787 3' -58.7 NC_002794.1 + 188788 0.66 0.867502
Target:  5'- cGGUAgcGGCCGGcccCGCCGaGCG-CCGUCCa -3'
miRNA:   3'- -CCGU--UCGGCCa--GUGGC-CGUaGGUGGG- -5'
10787 3' -58.7 NC_002794.1 + 188675 0.66 0.874547
Target:  5'- aGGCGAagucGUCGGcCACgCGGUAcagCuCGCCCg -3'
miRNA:   3'- -CCGUU----CGGCCaGUG-GCCGUa--G-GUGGG- -5'
10787 3' -58.7 NC_002794.1 + 188269 0.73 0.483715
Target:  5'- cGGCGGGCCGGguagcggaugcagggCGCCGcGCG-CCggACCCg -3'
miRNA:   3'- -CCGUUCGGCCa--------------GUGGC-CGUaGG--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.